Browse Element(s) Details


Os.11360.1.S1_at

Description gb:AU075382
DB_XREF= gi:5056003
DB_XREF=AU075382
CLONE=E2932_4Z
TID=Os.11360.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.17 (P0490D09.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5674011/11F-box domain containing protein, expressed
LOC_Os03g282701/11Leucine Rich Repeat family protein, expressed
LOC_Os01g567501/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005739cellular_componentmitochondrion
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11360.1.S1_at--782--9431Chr01:33067876..33067900 (25 bp)
TCGGTACATCTGGAGGGAGCTGCCC
LOC_Os01g56740
Os.11360.1.S1_at--253--852Chr01:33073064..33073088 (25 bp)
ATGGACGGGAAAACCTGCACTCCAG
LOC_Os01g56750
Os.11360.1.S1_at--498--9111Chr01:33068117..33068141 (25 bp)
TCGAACTACACCTCTCAAGTTTGGT
LOC_Os01g56740
Os.11360.1.S1_at--248--7691Chr01:33068150..33068174 (25 bp)
GGGTAAGCTAGTTTTTGATCTGTCT
LOC_Os01g56740
Os.11360.1.S1_at--646--471Chr01:33068167..33068191 (25 bp)
ATCTGTCTAACAGGTGCTTCGTCTG
LOC_Os01g56740
Os.11360.1.S1_at--703--4911Chr01:33068182..33068206 (25 bp)
GCTTCGTCTGCATTGTCTTTGTTTC
LOC_Os01g56740
Os.11360.1.S1_at--977--6931Chr01:33068253..33068277 (25 bp)
GTAGTTTCTGATCAGTCTCCAACTG
LOC_Os01g56740
Os.11360.1.S1_at--684--5032Chr01:33068287..33068311 (25 bp)
GCAGAACACCTTTTTCTAGTAGAAA
LOC_Os01g56740
Os.11360.1.S1_at--168--9051Chr01:33068324..33068348 (25 bp)
TGCAGCTATGATCAATACACCGTTT
LOC_Os01g56740
Os.11360.1.S1_at--1056--3351Chr01:33068341..33068365 (25 bp)
CACCGTTTGATAATTTCTGCTTCCC
LOC_Os01g56740
Os.11360.1.S1_at--937--4911Chr01:33068359..33068383 (25 bp)
GCTTCCCACTTAATTGCATGATTCA
LOC_Os01g56740
Target Sequence 
TCGGTACATCTGGAGGGAGCTGCCCTCGCTGGAAGGCCGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCCTACGACG
CGGATCAGTACCCTGGCTTCGAGGGCGGCATCTACTTCTTCGATCATCGGATCGCCGGGCAGCTCGGCGACGCGCCGGCG
CAGTACCCCTGCAGCGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGACCGCTTCTTCCCGGAGCAAGACCC
ATCGAACTACACCTCTCAAGTTTGGTTGCTCAACGGGTAAGCTAGTTTTTGATCTGTCTAACAGGTGCTTCGTCTGCATT
GTCTTTGTTTCTTTTTGCTGAGTTTGGAAGTTTGGATGGTATTGTAGTGCTGAGATTGTAGTTTCTGATCAGTCTCCAAC
TGTTAGAAGAAGCAGAACACCTTTTTCTAGTAGAAATCTCTTTGCTATTGCAGCTATGATCAATACACCGTTTGATAATT
TCTGCTTCCCACTTAATTGCATGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis