Browse Element(s) Details


Os.11419.1.S1_at

Description gb:AK102685.1
DB_XREF= gi:32987894
TID=Os.11419.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102M24, full insert sequence.
FL= gb:AK102685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1191011/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11419.1.S1_at--270--2811Chr03:6223668..6223692 (25 bp)
AAGATCACCGGTATTCCAGCAGCAG
LOC_Os03g11910
Os.11419.1.S1_at--644--9051Chr03:6223617..6223641 (25 bp)
TGCATGGACATCGACGCTGGCAATG
LOC_Os03g11910
Os.11419.1.S1_at--743--2971Chr03:6223596..6223620 (25 bp)
AATGTCCTCAGGGTATTCGCCGGCG
LOC_Os03g11910
Os.11419.1.S1_at--862--4731Chr03:6223551..6223575 (25 bp)
GCTGTTCCACCGTTCATTGAGGTGA
LOC_Os03g11910
Os.11419.1.S1_at--709--10091Chr03:6223470..6223494 (25 bp)
TATGGCAGTACGCTTGACCTGGCTA
LOC_Os03g11910
Os.11419.1.S1_at--394--8931Chr03:6223456..6223480 (25 bp)
TGACCTGGCTACTATCCCGAAGAAG
LOC_Os03g11910
Os.11419.1.S1_at--61--10791Chr03:6223363..6223387 (25 bp)
TTGTATGACTCGTATCATCCGGTGC
LOC_Os03g11910
Os.11419.1.S1_at--990--551Chr03:6223347..6223371 (25 bp)
ATCCGGTGCCGTAGTTCGTGCATAT
LOC_Os03g11910
Os.11419.1.S1_at--549--7331Chr03:6223330..6223354 (25 bp)
GTGCATATGTGGTTCGACCGTGTCA
LOC_Os03g11910
Os.11419.1.S1_at--88--8591Chr03:6223294..6223318 (25 bp)
TGGTTCAGTAGCTTGTTTGCCGGAC
LOC_Os03g11910
Os.11419.1.S1_at--205--6111Chr03:6223249..6223273 (25 bp)
GAGTGCCAATGTCATCTCTGTACAA
LOC_Os03g11910
Target Sequence 
AAGATCACCGGTATTCCAGCAGCAGCAAAGGGCACCGTCGAAATCAATGTCTGCATGGACATCGACGCTGGCAATGTCCT
CAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACG
ATGGCCATGGCTGGTGCGGACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTACTATCCCGAAGAAGCTG
CATCCTTGAGAAATTGCATATCGTCGCATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATGACTCGTAT
CATCCGGTGCCGTAGTTCGTGCATATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCAGTAGCTTGTTTGCCGGACT
TTTTACATGTAAACATAAAGAGTGCCAATGTCATCTCTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis