Browse Element(s) Details


Os.11527.1.S1_at

Description gb:AK121653.1
DB_XREF= gi:37991276
TID=Os.11527.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061I03, full insert sequence.
FL= gb:AK121653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0296011/11histone deacetylase complex subunit SAP18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11527.1.S1_at--886--1991Chr02:1160246..1160269 (24 bp)
ACTCCGAGAGCTCACTGATCTTGTG
LOC_Os02g02960
Os.11527.1.S1_at--790--3651Chr02:1159982..1160006 (25 bp)
CTTTTGCTTTCGTGTACCCTGATAA
LOC_Os02g02960
Os.11527.1.S1_at--949--2711Chr02:1159959..1159983 (25 bp)
AAGCATGGTCGTTTCGTTGTCAAAG
LOC_Os02g02960
Os.11527.1.S1_at--928--9711Chr02:1159389..1159413 (25 bp)
TCAACCTTCTCTTATGGCCATGGAA
LOC_Os02g02960
Os.11527.1.S1_at--426--2011Chr02:1159348..1159371 (24 bp)
ACTCTTGCAGAGCTAGGATTCCAGA
LOC_Os02g02960
Os.11527.1.S1_at--338--5591Chr02:1159191..1159215 (25 bp)
GAAATAGTGTGTTTCTCCCTGCCTA
LOC_Os02g02960
Os.11527.1.S1_at--111--9011Chr02:1159160..1159184 (25 bp)
TGAATCCAGCTTTCCTGTGGCGGTA
LOC_Os02g02960
Os.11527.1.S1_at--1017--9951Chr02:1159137..1159161 (25 bp)
TACCCAGCTTTCCTGTGGTGGTGAA
LOC_Os02g02960
Os.11527.1.S1_at--1055--10151Chr02:1158994..1159018 (25 bp)
TATACCTGTTCGTGGTTTCCTTGGA
LOC_Os02g02960
Os.11527.1.S1_at--913--6031Chr02:1158964..1158988 (25 bp)
GAGATCTGAACATCACGCGTTTTCC
LOC_Os02g02960
Os.11527.1.S1_at--318--111Chr02:1158935..1158959 (25 bp)
ATTCTCTGCGCCGAGTAGGATTAAA
LOC_Os02g02960
Target Sequence 
ACTCCGAGAGCTCACTGATCTTGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCG
TGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAGGTGGGTTCAACCTTCTCTTATGGCCATGGAAGGGGAGATGAT
GCTAAAACTCTTGCAGAGCTAGGATTCCAGATAGGGGATTACTTGAGTGTTGCAATCTATTGAGTGACACTGCTTCACGA
AATAGTGTGTTTCTCCCTGCCTACCATGCTGAATCCAGCTTTCCTGTGGCGGTACCCAGCTTTCCTGTGGTGGTGAATAT
CTCTGTAGTACTAGAGACGTGATACCAGAACTGTTTGTTATGGTAGTAACCTTGGAATTCACTCAGTATTTCGAGTGTGT
TGAACACTTAAAACGTTTGATGTGATTGCGTGTTATATACCTGTTCGTGGTTTCCTTGGAACTGTGAGATCTGAACATCA
CGCGTTTTCCATTGATTCTCTGCGCCGAGTAGGATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis