Browse Element(s) Details


Os.11552.1.S1_at

Description gb:U95217.1
DB_XREF= gi:2443458
TID=Os.11552.1
CNT=72
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11552 (NCBI UniGene Cluster)
UG_TITLE=Cationic peroxidase (OsCPX1) mRNA, complete cds
DEF=Oryza sativa peroxidase (Os-PRX1) mRNA, complete cds.
FL= gb:AK060789.1 gb:AF019743.1 gb:AK104833.1 gb:U95217.1 gb:AK102307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5915010/11Peroxidase 12 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59110Os.28943.1.S1_x_at1/114+34943788..34945506retrotransposon protein, putative, unclassified
LOC_Os04g59120Os.55040.1.S1_at11/114+34948765..34951922Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g59130Os.19114.1.S2_at11/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59130Os.19114.1.S1_at10/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11552.1.S1_at--262--2651Chr04:34970060..34970084 (25 bp)
AAGCCACAATCCTAGACCAACATAC
LOC_Os04g59150
Os.11552.1.S1_at--272--10031Chr04:34970048..34970072 (25 bp)
TAGACCAACATACTATGCACGTAGT
LOC_Os04g59150
Os.11552.1.S1_at--246--231Chr04:34970010..34970034 (25 bp)
ATATTCCACTTTTCCACAAGATAGG
LOC_Os04g59150
Os.11552.1.S1_at--884--2211Chr04:34969995..34970019 (25 bp)
ACAAGATAGGGTCCAGTCCAGTATA
LOC_Os04g59150
Os.11552.1.S1_at--82--1351Chr04:34969956..34969980 (25 bp)
AGAGATGGACCATTTGCAGGAGGCA
LOC_Os04g59150
Os.11552.1.S1_at--1031--6011Chr04:34969920..34969944 (25 bp)
GAGAGTGATCGATCTTTGTTAGCTA
LOC_Os04g59150
Os.11552.1.S1_at--125--2971Chr04:34969884..34969908 (25 bp)
AATGGCGTCCAAGCTGGGTATGGTT
LOC_Os04g59150
Os.11552.1.S1_at--200--831Chr04:34969865..34969889 (25 bp)
ATGGTTGTGCTACTGATCTCGGGCC
LOC_Os04g59150
Os.11552.1.S1_at--1103--4971Chr04:34969741..34969765 (25 bp)
GCATCGTGAGGTGGCACGTCACCGA
LOC_Os04g59150
Os.11552.1.S1_at--145--8951NONE
TGACGGGTTCCCAAAGCCGAGCTGG
NONE
Os.11552.1.S1_at--741--7711Chr04:34969448..34969472 (25 bp)
GGGTGAGATACCCAACCAGACGCTG
LOC_Os04g59150
Target Sequence 
AAGCCACAATCCTAGACCAACATACTATGCACGTAGTAGGAGTATACATTATATTCCACTTTTCCACAAGATAGGGTCCA
GTCCAGTATATATATAGGGCATGGAGAGATGGACCATTTGCAGGAGGCAGAGGTCGAGCTGAGAGTGATCGATCTTTGTT
AGCTAGAGTGTTGAGCAATGGCGTCCAAGCTGGGTATGGTTGTGCTACTGATCTCGGGCCTCTTTGCTGCCCGTTGCGCG
GCCGTGGTGACCACCGGCGAACCCGTCGTCGCCGGCCTCTCCTGGGGGTTCTATGACACGTCGTGCCCGTCGGTGGAGGG
CATCGTGAGGTGGCACGTCACCGAGGCCCTCCGCCGCGACATCGGCATCGCCGCCGGCCTCGTCCGCATCTTCTTCCACG
ACTGCTTCCCCGCAGGGGTGCGACGCGTTCGGTCCCTCCTGACGGGTTCCCAAAGCCGAGCTGGGTGAGATACCCAACCA
GACGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis