Browse Element(s) Details


Os.11577.1.S1_a_at

Description gb:AK110688.1
DB_XREF= gi:32995897
TID=Os.11577.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11577 (NCBI UniGene Cluster)
UG_TITLE=MRNA for beta 1,3-glycosyltransferase-like protein III (b3gt3 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A01, full insert sequence.
FL= gb:AK110688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0628011/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06300Os.15230.1.S1_at11/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06300Os.49478.1.S1_at1/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06310OsAffx.27470.1.S1_at11/116+2928391..2930982hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11577.1.S1_a_at--689--8551Chr06:2905334..2905358 (25 bp)
TGGATCCTGGATGCTTGCTATGAAC
LOC_Os06g06280
Os.11577.1.S1_a_at--321--7971Chr06:2905342..2905366 (25 bp)
GGATGCTTGCTATGAACGTCAACCA
LOC_Os06g06280
Os.11577.1.S1_a_at--507--5451Chr06:2905355..2905379 (25 bp)
GAACGTCAACCATGAGAACACACAT
LOC_Os06g06280
Os.11577.1.S1_a_at--112--2191Chr06:2905374..2905398 (25 bp)
ACACATGCACTTTGTTCACCTGAGT
LOC_Os06g06280
Os.11577.1.S1_a_at--1090--10511Chr06:2905388..2905412 (25 bp)
TTCACCTGAGTGCACAGAGTCTTCA
LOC_Os06g06280
Os.11577.1.S1_a_at--418--6111Chr06:2905395..2905419 (25 bp)
GAGTGCACAGAGTCTTCAATTGCTG
LOC_Os06g06280
Os.11577.1.S1_a_at--565--6091Chr06:2905404..2905428 (25 bp)
GAGTCTTCAATTGCTGTTTGGGATA
LOC_Os06g06280
Os.11577.1.S1_a_at--539--7671Chr06:2905423..2905444 (22 bp)
GGGATATTCCAAAATGTTCAGGGCT
LOC_Os06g06280
Os.11577.1.S1_a_at--711--711Chr06:2905436..2905850 (25 bp)
ATGTTCAGGGCTATGCCACCCGGAG
LOC_Os06g06280
Os.11577.1.S1_a_at--866--3451Chr06:2905831..2905855 (25 bp)
CAGGGCTATGCCACCCGGAGGTAAA
LOC_Os06g06280
Os.11577.1.S1_a_at--342--6151Chr06:2905848..2905872 (25 bp)
GAGGTAAAGATGCTGGAGCTTCATC
LOC_Os06g06280
Target Sequence 
TGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAA
TTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11577.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis