Browse Element(s) Details


Os.11582.2.S1_at

Description gb:AK121762.1
DB_XREF= gi:37991385
TID=Os.11582.2
CNT=42
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ribosomal protein L15 (OJ1523_A02.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090F15, full insert sequence.
FL= gb:AK121762.1 gb:AK060928.1 gb:AK104774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4018011/1160S ribosomal protein L15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40150Os.33624.3.S1_x_at11/113+22264996..22268465hypothetical protein
LOC_Os03g40150OsAffx.25216.1.S1_x_at7/113+22264996..22268465hypothetical protein
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40170Os.30983.1.S1_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40170Os.30983.2.S1_x_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40180Os.11582.1.S1_s_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40180Os.11582.2.S1_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40230OsAffx.25448.1.S1_at11/113+22315656..22316323hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11582.2.S1_at--69--731Chr03:22291310..22291334 (25 bp)
ATGATTCAGTTATCGAATGCTCTGT
LOC_Os03g40180
Os.11582.2.S1_at--33--6571Chr03:22291308..22291332 (25 bp)
GATTCAGTTATCGAATGCTCTGTGA
LOC_Os03g40180
Os.11582.2.S1_at--514--10531Chr03:22291306..22291330 (25 bp)
TTCAGTTATCGAATGCTCTGTGAGC
LOC_Os03g40180
Os.11582.2.S1_at--378--3451Chr03:22291304..22291328 (25 bp)
CAGTTATCGAATGCTCTGTGAGCTG
LOC_Os03g40180
Os.11582.2.S1_at--232--6791Chr03:22291302..22291326 (25 bp)
GTTATCGAATGCTCTGTGAGCTGGT
LOC_Os03g40180
Os.11582.2.S1_at--359--531Chr03:22291299..22291323 (25 bp)
ATCGAATGCTCTGTGAGCTGGTTAT
LOC_Os03g40180
Os.11582.2.S1_at--904--9091Chr03:22291293..22291317 (25 bp)
TGCTCTGTGAGCTGGTTATGATTAG
LOC_Os03g40180
Os.11582.2.S1_at--982--3771Chr03:22291291..22291315 (25 bp)
CTCTGTGAGCTGGTTATGATTAGTT
LOC_Os03g40180
Os.11582.2.S1_at--560--3891Chr03:22291289..22291313 (25 bp)
CTGTGAGCTGGTTATGATTAGTTTT
LOC_Os03g40180
Os.11582.2.S1_at--713--5891Chr03:22291285..22291309 (25 bp)
GAGCTGGTTATGATTAGTTTTTAAG
LOC_Os03g40180
Os.11582.2.S1_at--987--711Chr03:22291276..22291300 (25 bp)
ATGATTAGTTTTTAAGTATATCTCC
LOC_Os03g40180
Target Sequence 
ATGATTCAGTTATCGAATGCTCTGTGAGCTGGTTATGATTAGTTTTTAAGTATATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11582.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis