Browse Element(s) Details


Os.11693.1.S1_at

Description gb:AK070952.1
DB_XREF= gi:32980975
TID=Os.11693.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073D03, full insert sequence.
FL= gb:AK070952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3901011/11lactose permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11693.1.S1_at--1029--6871Chr07:23394523..23394546 (24 bp)
GTATATTCTTGAGTCCTATCAAGGA
LOC_Os07g39010
Os.11693.1.S1_at--393--9591Chr07:23394529..23394649 (25 bp)
TCTTGAGTCCTATCAAGGAAGTACC
LOC_Os07g39010
Os.11693.1.S1_at--621--931Chr07:23394640..23394664 (25 bp)
AGGAAGTACCAATACCAGACAGAAC
LOC_Os07g39010
Os.11693.1.S1_at--738--6971Chr07:23394645..23394669 (25 bp)
GTACCAATACCAGACAGAACCTAGA
LOC_Os07g39010
Os.11693.1.S1_at--808--3411Chr07:23394655..23394679 (25 bp)
CAGACAGAACCTAGAGTTGGCATTT
LOC_Os07g39010
Os.11693.1.S1_at--942--6611Chr07:23394670..23394694 (25 bp)
GTTGGCATTTGGTTATTCAGTTACA
LOC_Os07g39010
Os.11693.1.S1_at--337--7871Chr07:23394680..23394704 (25 bp)
GGTTATTCAGTTACAAGACTTGGTT
LOC_Os07g39010
Os.11693.1.S1_at--605--7671Chr07:23394707..23394731 (25 bp)
GGGTTAGTCCCAGCTGCCTGTTCAC
LOC_Os07g39010
Os.11693.1.S1_at--728--3751Chr07:23394734..23394758 (25 bp)
CTCTCAGCCATAATAGCTTATACGA
LOC_Os07g39010
Os.11693.1.S1_at--503--4891Chr07:23394749..23394773 (25 bp)
GCTTATACGATGGACCTACCTGACA
LOC_Os07g39010
Os.11693.1.S1_at--620--6951Chr07:23395029..23395053 (25 bp)
GTAGCATGGGAGTACAATCCTGTGT
LOC_Os07g39010
Target Sequence 
GTATATTCTTGAGTCCTATCAAGGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTACAAGAC
TTGGTTTGGGGTTAGTCCCAGCTGCCTGTTCACTGCTCTCAGCCATAATAGCTTATACGATGGACCTACCTGACACTCGG
CGAAGACCTTTAGTTGAACCTCTTCTCGCATAACTCTGCTGGTAGCACTTCCATTGCAACTGTATATATGTCCAACGGCC
AATGACTCCACTGCTGGAGGCTGGAGCTATTAACAACAGTACAGTTATACGACTCGAAAGGAAAGAAACTCGGACATTGT
CAATTCATTTTGACTTGGTCTGAAATTCTGAATTAAGTTATAGATGACACAGTGAAAGGTACTCAGCAACGAGTTGAGTA
TGTACCAAAAGTAGCATGGGAGTACAATCCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis