Browse Element(s) Details


Os.11696.1.S1_a_at

Description gb:AK072309.1
DB_XREF= gi:32982332
TID=Os.11696.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) auxin response factor 2 (OSJNBa0093F16.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence.
FL= gb:AK072309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7027011/11Auxin response factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010227biological_processfloral organ abscission
GO:0016481biological_processnegative regulation of transcription
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11696.1.S1_a_at--187--591Chr01:41026907..41026931 (25 bp)
ATGCCCCAAGGAAAGATGACTCTTC
LOC_Os01g70270
Os.11696.1.S1_a_at--643--6311Chr01:41026921..41026945 (25 bp)
GATGACTCTTCAGAAAATGAGAAAG
LOC_Os01g70270
Os.11696.1.S1_a_at--46--1011Chr01:41027245..41027269 (25 bp)
AGGTTCAGTGAAGCGAGATGATACA
LOC_Os01g70270
Os.11696.1.S1_a_at--614--9851Chr01:41027266..41027290 (25 bp)
TACAAGAGGTAGATCGCATGGAGTC
LOC_Os01g70270
Os.11696.1.S1_a_at--331--6951Chr01:41027274..41027298 (25 bp)
GTAGATCGCATGGAGTCTTGAGAGA
LOC_Os01g70270
Os.11696.1.S1_a_at--558--9351Chr01:41027279..41027303 (25 bp)
TCGCATGGAGTCTTGAGAGAGAGAT
LOC_Os01g70270
Os.11696.1.S1_a_at--620--6011Chr01:41027295..41027319 (25 bp)
GAGAGAGATGCCATTCTGCGGGTCC
LOC_Os01g70270
Os.11696.1.S1_a_at--644--1351Chr01:41027298..41027322 (25 bp)
AGAGATGCCATTCTGCGGGTCCCAG
LOC_Os01g70270
Os.11696.1.S1_a_at--683--3591Chr01:41027306..41027330 (25 bp)
CATTCTGCGGGTCCCAGTCAAGTAA
LOC_Os01g70270
Os.11696.1.S1_a_at--953--9471Chr01:41027309..41027333 (25 bp)
TCTGCGGGTCCCAGTCAAGTAAACC
LOC_Os01g70270
Os.11696.1.S1_a_at--1126--1151Chr01:41027326..41027350 (25 bp)
AGTAAACCCCCTGATGTGTTGGTGA
LOC_Os01g70270
Target Sequence 
ATGCCCCAAGGAAAGATGACTCTTCAGAAAATGAGAAAGGTCATCTGCCGATGCCCAACAAATCAGATAACTAGGTTCAG
TGAAGCGAGATGATACAAGAGGTAGATCGCATGGAGTCTTGAGAGAGAGATGCCATTCTGCGGGTCCCAGTCAAGTAAAC
CCCCTGATGTGTTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11696.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis