Browse Element(s) Details


Os.1173.1.S1_at

Description gb:CB659887
DB_XREF= gi:29663612
DB_XREF=OSJNEd01D07.r
CLONE=OSJNEd01D07
TID=Os.1173.1
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1560011/11Purine-rich single-stranded DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1173.1.S1_at--454--851Chr01:8759621..8759645 (25 bp)
ATGGAAGTCAATCTGCTTCTGGACC
LOC_Os01g15600
Os.1173.1.S1_at--63--731Chr01:8759654..8759678 (25 bp)
ATGTTGAACGCCTGGTTGATTTGCC
LOC_Os01g15600
Os.1173.1.S1_at--745--7911Chr01:8759667..8759691 (25 bp)
GGTTGATTTGCCTCCTCAGGAAGAA
LOC_Os01g15600
Os.1173.1.S1_at--823--8271Chr01:8759698..8759722 (25 bp)
GGCATGGGCATGTCTAAGGTCATAA
LOC_Os01g15600
Os.1173.1.S1_at--635--6671Chr01:8759880..8759904 (25 bp)
GTTGCTGGAGCTGATCGTTCGTCGA
LOC_Os01g15600
Os.1173.1.S1_at--866--491Chr01:8759893..8759917 (25 bp)
ATCGTTCGTCGATAATCTTGCCACT
LOC_Os01g15600
Os.1173.1.S1_at--140--4411Chr01:8759912..8759936 (25 bp)
GCCACTCTCCGGGTTGAAGCAATTC
LOC_Os01g15600
Os.1173.1.S1_at--197--5451Chr01:8759999..8760023 (25 bp)
GAACGTGCGCACAGTGGAGTCCAGT
LOC_Os01g15600
Os.1173.1.S1_at--540--5851Chr01:8760051..8760075 (25 bp)
GACCATGGCCGTTACTGCTGTTATG
LOC_Os01g15600
Os.1173.1.S1_at--779--10431Chr01:8760071..8760095 (25 bp)
TTATGCCTCCTCTAGGTTTGTTATG
LOC_Os01g15600
Os.1173.1.S1_at--17--7551Chr01:8760102..8760126 (25 bp)
GTGGCTGTGCAGATCACGCAGTATT
LOC_Os01g15600
Target Sequence 
ATGGAAGTCAATCTGCTTCTGGACCAGAGGTAGATGTTGAACGCCTGGTTGATTTGCCTCCTCAGGAAGAAATTAGTGGC
ATGGGCATGTCTAAGGTCATAAGGGCAGATCAAAAGAGGTTCTTCTTTGACCTTGGAAGCAACAACAGGGGTCATTACCT
GAGGATTTCTGAGGTTGCTGGAGCTGATCGTTCGTCGATAATCTTGCCACTCTCCGGGTTGAAGCAATTCCATGAAATGG
TTGGCCNACTTTGTAGATATAATGAAGGACAGGCTGGAAGGGATGACGGGCGCGAACGTGCGCACAGTGGAGTCCAGTCA
GAGATGATTTAGCTTTGAGGTGCTCGACCATGGCCGTTACTGCTGTTATGCCTCCTCTAGGTTTGTTATGTGGTGTGTGG
CTGTGCAGATCACGCAGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis