Browse Element(s) Details


Os.11827.1.S1_a_at

Description gb:AK068824.1
DB_XREF= gi:32978849
TID=Os.11827.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamyl-alcohol dehydrogenase (B1129H01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162A03, full insert sequence.
FL= gb:AK059305.1 gb:AK068824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3448011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein
LOC_Os01g34460OsAffx.9057.3.S1_at11/111+19331291..19331875hypothetical protein
LOC_Os01g34470NANA1+19332274..19333839expressed protein
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified
LOC_Os01g34500OsAffx.11316.1.S1_at11/111+19349349..19350759hypothetical protein
LOC_Os01g34510OsAffx.11317.1.S1_at11/111+19352866..19354517hypothetical protein
LOC_Os01g34510OsAffx.7163.1.S1_at1/111+19352866..19354517hypothetical protein
LOC_Os01g34520OsAffx.23511.1.S1_at11/111+19359221..19359773hypothetical protein
LOC_Os01g34530OsAffx.21293.1.S1_at11/111+19360257..19363067transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11827.1.S1_a_at--802--9911Chr01:19339417..19339441 (25 bp)
TACGGTGAACCCAGCAATGGTCATT
LOC_Os01g34480
Os.11827.1.S1_a_at--1072--2951Chr01:19339432..19339456 (25 bp)
AATGGTCATTGGTCCCCTGCTGCAG
LOC_Os01g34480
Os.11827.1.S1_a_at--1087--5051Chr01:19339453..19339477 (25 bp)
GCAGCCTTCACTGAATACTAGTGCT
LOC_Os01g34480
Os.11827.1.S1_a_at--893--411Chr01:19340264..19340288 (25 bp)
ATCATCCTCGACATATCCTAATTTC
LOC_Os01g34480
Os.11827.1.S1_a_at--581--9651Chr01:19340287..19340311 (25 bp)
TCAGCTTTGGCTGGATAAACGTTAA
LOC_Os01g34480
Os.11827.1.S1_a_at--759--251Chr01:19340329..19340353 (25 bp)
ATATCCTTGCATATGAAGTTCCTTC
LOC_Os01g34480
Os.11827.1.S1_a_at--643--3411Chr01:19340398..19340422 (25 bp)
CAGAGCTCGTCCAAATCATTCGTGA
LOC_Os01g34480
Os.11827.1.S1_a_at--57--9431Chr01:19340417..19340441 (25 bp)
TCGTGAGATGTATCCCAATATTCCT
LOC_Os01g34480
Os.11827.1.S1_a_at--145--10231Chr01:19340435..19340692 (25 bp)
TATTCCTCTGCCAGACAAGTGTGCA
LOC_Os01g34480
Os.11827.1.S1_a_at--218--2311Chr01:19340742..19340766 (25 bp)
AAAGCTTGGGCCTGGAACTGACTCC
LOC_Os01g34480
Os.11827.1.S1_a_at--1049--9011Chr01:19340769..19340793 (25 bp)
TGCACACGAGCATCAAGGAGACCAT
LOC_Os01g34480
Target Sequence 
TACGGTGAACCCAGCAATGGTCATTGGTCCCCTGCTGCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAA
TCAATGGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGGNATGTTGCCCTGGCACATATCCT
TGCATATGAAGTTCCTTCAGCAAATGGAAGATATTGCATGGTTGAAAGAGTTGCGCACTACTCAGAGCTCGTCCAAATCA
TTCGTGAGATGTATCCCAATATTCCTCTGCCAGACAAGTGTGCAGATGACAAGCCATCAGTGCCAATCTACCAGGTATCA
AAGGAAAAGATAAAAAGCTTGGGCCTGGAACTGACTCCCCTGCACACGAGCATCAAGGAGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11827.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis