Browse Element(s) Details


Os.11835.4.S1_x_at

Description gb:AK100640.1
DB_XREF= gi:32985849
TID=Os.11835.4
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110G01, full insert sequence.
FL= gb:AK060758.1 gb:AK100640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2016411/11Copper amine oxidase, enzyme domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20120OsAffx.8864.1.S1_at8/114+11183974..11188313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20130OsAffx.13881.1.S1_at11/114+11190595..11191308hypothetical protein
LOC_Os04g20140NANA4+11194506..11197195retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g20150OsAffx.13882.1.S1_at9/114+11198453..11200211hypothetical protein
LOC_Os04g20150Os.54523.1.S1_at2/114+11198453..11200211hypothetical protein
LOC_Os04g20150OsAffx.22629.1.S1_at1/114+11198453..11200211hypothetical protein
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11835.4.S1_x_at--608--791Chr04:11218641..11218665 (25 bp)
ATGGGCTGGTGGTCTATTTGTCTAC
LOC_Os04g20164
Os.11835.4.S1_x_at--704--5611Chr04:11218681..11218705 (25 bp)
GACACACTTGCAACTTGGTCCGAAA
LOC_Os04g20164
Os.11835.4.S1_x_at--86--2891Chr04:11218817..11218840 (24 bp)
AAGGGACCGTCCGATCGAGAACAAG
LOC_Os04g20164
Os.11835.4.S1_x_at--952--951Chr04:11218839..11218863 (25 bp)
AGGACCTGGTGCTGTGGTACACGCT
LOC_Os04g20164
Os.11835.4.S1_x_at--172--5471Chr04:11218942..11218966 (25 bp)
GAACTTCTTTGAGAGCAACCCCATC
LOC_Os04g20164
Os.11835.4.S1_x_at--665--1851Chr04:11219021..11219045 (25 bp)
ACGACCTCTTGAGACGACAGCGGAT
LOC_Os04g20164
Os.11835.4.S1_x_at--1091--7951Chr04:11219042..11219066 (25 bp)
GGATCACCGACATGTGTGCGTGCAT
LOC_Os04g20164
Os.11835.4.S1_x_at--978--6331Chr04:11219071..11219095 (25 bp)
GATGCTTCGGTGTATCGATCTACTG
LOC_Os04g20164
Os.11835.4.S1_x_at--227--2091Chr04:11219130..11219154 (25 bp)
ACATCTACGGATTTGGAGCTAGCCA
LOC_Os04g20164
Os.11835.4.S1_x_at--262--8351Chr04:11219156..11219180 (25 bp)
GGCTGGCTATCTATGTTGCTCTATA
LOC_Os04g20164
Os.11835.4.S1_x_at--969--8911Chr04:11219187..11219211 (25 bp)
TGAGCGGATGTATGTGCACTGCAGT
LOC_Os04g20164
Target Sequence 
ATGGGCTGGTGGTCTATTTGTCTACCAGAGCAAAGGGGAGGACACACTTGCAACTTGGTCCGAAAGGGACCGTCCGATCG
AGAACAAGGACCTGGTGCTGTGGTACACGCTGGGGTTTCACCATGTCCCGTGCCAGGAGGACTTCCCCATCATGCCCACG
GTGTCGTCCAGCTTCGACCTTAAGCCNGTGAACTTCTTTGAGAGCAACCCCATCCCTAGGGCAGCGTCCGACCCAGGAGA
ACGACCTGCCGGTGTGTGCCGCCGCTGCCACGACCTCTTGAGACGACAGCGGATCACCGACATGTGTGCGTGCATGGTCG
ATGCTTCGGTGTATCGATCTACTGATATGGATTGTTCATAGTGAAAGAATGTATCGGTACATCTACGGATTTGGAGCTAG
CCATGGCTGGCTATCTATGTTGCTCTATATATGTATGAGCGGATGTATGTGCACTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11835.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis