Browse Element(s) Details

Os.11888.1.S1_s_at

Description

gb:AK068487.1
DB_XREF= gi:32978505
TID=Os.11888.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156N12, full insert sequence.
FL= gb:AK068487.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g08270	11/11	Ataxin-2 C-terminal region family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g08170	Os.20885.1.S1_at	11/11	3	+	4152295..4158364	serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170	OsAffx.30714.1.S1_x_at	1/11	3	+	4152295..4158364	serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180	OsAffx.12777.1.S1_at	11/11	3	+	4158638..4159174	hypothetical protein
LOC_Os03g08190	OsAffx.25015.1.S1_at	11/11	3	+	4159536..4159937	hypothetical protein
LOC_Os03g08200	OsAffx.12778.1.S1_at	11/11	3	+	4160779..4161603	expressed protein
LOC_Os03g08210	OsAffx.25016.1.S1_at	11/11	3	+	4163938..4164646	hypothetical protein
LOC_Os03g08220	Os.9616.1.S1_at	11/11	3	+	4166275..4172317	lipoxygenase 6, putative, expressed
LOC_Os03g08230	OsAffx.3172.1.S1_at	11/11	3	+	4173447..4175426	cation exchanger, putative, expressed
LOC_Os03g08230	Os.40052.1.A1_s_at	11/11	3	+	4173447..4175426	cation exchanger, putative, expressed
LOC_Os03g08240	NA	NA	3	+	4176306..4176524	hypothetical protein
LOC_Os03g08250	Os.14248.1.S1_at	10/11	3	+	4178926..4179852	expressed protein
LOC_Os03g08260	OsAffx.25018.1.S1_at	10/11	3	+	4181709..4182443	hypothetical protein
LOC_Os03g08270	Os.11888.1.S1_s_at	11/11	3	+	4182618..4189420	Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270	Os.11888.3.S1_x_at	11/11	3	+	4182618..4189420	Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270	Os.11888.4.S1_at	10/11	3	+	4182618..4189420	Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270	OsAffx.19395.1.S1_at	1/11	3	+	4182618..4189420	Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280	Os.3704.1.S1_at	11/11	3	+	4189643..4192104	Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290	Os.49494.2.A1_at	11/11	3	+	4201200..4203097	expressed protein
LOC_Os03g08300	Os.49494.1.S1_at	10/11	3	+	4202547..4207585	glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310	Os.8088.1.S1_at	11/11	3	+	4211121..4212155	ZIM motif family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006298	biological_process	mismatch repair
GO:0003684	molecular_function	damaged DNA binding
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11888.1.S1_s_at--1147--271	1	Chr03:4189198..4189222 (25 bp)	AAGAATTGACCCCTGTACTACTGTA	LOC_Os03g08270
Os.11888.1.S1_s_at--1058--519	1	Chr03:4189200..4189224 (25 bp)	GAATTGACCCCTGTACTACTGTATA	LOC_Os03g08270
Os.11888.1.S1_s_at--825--315	1	Chr03:4189201..4189225 (25 bp)	AATTGACCCCTGTACTACTGTATAT	LOC_Os03g08270
Os.11888.1.S1_s_at--141--1077	1	Chr03:4189203..4189227 (25 bp)	TTGACCCCTGTACTACTGTATATGG	LOC_Os03g08270
Os.11888.1.S1_s_at--1034--581	1	Chr03:4189205..4189229 (25 bp)	GACCCCTGTACTACTGTATATGGCA	LOC_Os03g08270
Os.11888.1.S1_s_at--808--427	1	Chr03:4189209..4189233 (25 bp)	CCTGTACTACTGTATATGGCAGAGA	LOC_Os03g08270
Os.11888.1.S1_s_at--52--1011	1	Chr03:4189223..4189247 (25 bp)	TATGGCAGAGATGAGTAGTACTAGC	LOC_Os03g08270
Os.11888.1.S1_s_at--1001--629	1	Chr03:4189232..4189256 (25 bp)	GATGAGTAGTACTAGCAGAATAGAA	LOC_Os03g08270
Os.11888.1.S1_s_at--628--557	1	Chr03:4189261..4189285 (25 bp)	GAAATAGCTGTTGTAATATTCGTAT	LOC_Os03g08270
Os.11888.1.S1_s_at--581--159	1	Chr03:4189266..4189290 (25 bp)	AGCTGTTGTAATATTCGTATAGCAA	LOC_Os03g08270
Os.11888.1.S1_s_at--844--873	1	Chr03:4189272..4189296 (25 bp)	TGTAATATTCGTATAGCAAGGCTTT	LOC_Os03g08270

Target Sequence

AAGAATTGACCCCTGTACTACTGTATATGGCAGAGATGAGTAGTACTAGCAGAATAGAAATTTGAAATAGCTGTTGTAAT
ATTCGTATAGCAAGGCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis