Browse Element(s) Details


Os.11943.2.S1_at

Description gb:AK062431.1
DB_XREF= gi:32972449
TID=Os.11943.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H10, full insert sequence.
FL= gb:AK062431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g508001/11expressed protein
LOC_Os08g451401/11Glutaredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11943.2.S1_at--962--511Chr08:28212674..28212698 (25 bp)
ATGCGAACACAAAAACTTGCCTTTT
LOC_Os08g45140
Os.11943.2.S1_at--394--10311Chr08:28212701..28212725 (25 bp)
TTTCTTATTATGTCTTGGTTATGCG
NONE
Os.11943.2.S1_at--825--10091Chr08:28212709..28212733 (25 bp)
TATGTCTTGGTTATGCGTTTATAGC
NONE
Os.11943.2.S1_at--996--1331Chr08:28212737..28212761 (25 bp)
AGAGTATTACCTGGCTGTGCGTTGG
NONE
Os.11943.2.S1_at--977--3911Chr08:28212747..28212771 (25 bp)
CTGGCTGTGCGTTGGATCCGTGATA
NONE
Os.11943.2.S1_at--300--9291Chr08:28212763..28212787 (25 bp)
TCCGTGATAGGAGATGTAGCTGAGA
NONE
Os.11943.2.S1_at--832--832Chr08:28212806..28212830 (25 bp)
ATGGATGTGTTGATATGCTGGGTTT
NONE
Os.11943.2.S1_at--1014--251Chr08:28212818..28212842 (25 bp)
ATATGCTGGGTTTTGTAGTCTGTGC
NONE
Os.11943.2.S1_at--953--10251Chr08:28212829..28212852 (24 bp)
TTTGTAGTCTGTGCTGGATCCAGCA
NONE
Os.11943.2.S1_at--39--4731NONE
GCTGGATCCAGCAAACAGGGCTTGA
NONE
Os.11943.2.S1_at--667--351NONE
ATAAGAGGATTTTGATTTGTTACCA
NONE
Target Sequence 
ATGCGAACACAAAAACTTGCCTTTTTTTTTCTTATTATGTCTTGGTTATGCGTTTATAGCAACAGAGTATTACCTGGCTG
TGCGTTGGATCCGTGATAGGAGATGTAGCTGAGAAAAGAGGTTTGCTGTGAAATGGATGTGTTGATATGCTGGGTTTTGT
AGTCTGTGCTGGATCCAGCAAACAGGGCTTGATAAGAGGATTTTGATTTGTTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11943.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis