Browse Element(s) Details


Os.11972.1.S1_s_at

Description gb:AK064931.1
DB_XREF= gi:32974949
TID=Os.11972.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O10, full insert sequence.
FL= gb:AK064931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3301011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32970Os.52270.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.49159.1.A1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_at11/115+19244289..19248341expressed protein
LOC_Os05g32970Os.53103.1.S1_x_at11/115+19244289..19248341expressed protein
LOC_Os05g32980NANA5+19250881..19251281hypothetical protein
LOC_Os05g32990NANA5+19253513..19254490hypothetical protein
LOC_Os05g33000OsAffx.27130.1.S1_at11/115+19257694..19262043zinc finger family protein, putative, expressed
LOC_Os05g33020Os.37864.1.A1_at11/115+19263013..19270242secY family protein, putative, expressed
LOC_Os05g33010Os.11972.1.S1_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33010Os.11972.1.S1_s_at11/115+19270410..19274754DnaJ domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_s_at11/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.47919.1.A1_at9/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33030Os.24220.1.A1_at1/115+19276069..19280326Kinesin motor domain containing protein, expressed
LOC_Os05g33040Os.8306.1.S1_at11/115+19280554..19282706Cyclin, N-terminal domain containing protein, expressed
LOC_Os05g33050OsAffx.4503.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33050Os.7606.1.S1_at11/115+19285596..19294403armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os05g33060OsAffx.4504.1.S1_x_at11/115+19296765..19297268hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11972.1.S1_s_at--635--5271Chr05:19273015..19273039 (25 bp)
GAATGAACTTCTATGCATTGGCACT
LOC_Os05g33010
Os.11972.1.S1_s_at--1103--7971Chr05:19273377..19273401 (25 bp)
GGATGCCCGTATTCTTGTGTTAAAA
LOC_Os05g33010
Os.11972.1.S1_s_at--273--8771Chr05:19273394..19273418 (25 bp)
TGTTAAAAGGGCACCTCACGCGTTT
LOC_Os05g33010
Os.11972.1.S1_s_at--788--6311Chr05:19273428..19273452 (25 bp)
GATGACACTGGTACAGCACATGCAT
LOC_Os05g33010
Os.11972.1.S1_s_at--91--3311Chr05:19273444..19273683 (25 bp)
CACATGCATCATCTCAAGGTCACTA
LOC_Os05g33010
Os.11972.1.S1_s_at--128--5711Chr05:19273688..19273712 (25 bp)
GACTACAATGTCCAACTTGCTGTTG
LOC_Os05g33010
Os.11972.1.S1_s_at--1015--3571Chr05:19273732..19273756 (25 bp)
CATATACTATGTCACGCCCTGCCAA
LOC_Os05g33010
Os.11972.1.S1_s_at--914--4531Chr05:19273747..19273771 (25 bp)
GCCCTGCCAACGTACTATTTTGGAG
LOC_Os05g33010
Os.11972.1.S1_s_at--948--311Chr05:19274423..19274447 (25 bp)
ATACGACCTCTCTGAAGCAGCAGTT
LOC_Os05g33010
Os.11972.1.S1_s_at--950--7991Chr05:19274539..19274563 (25 bp)
GGATGTGATCCACTCTATAGCACAG
LOC_Os05g33010
Os.11972.1.S1_s_at--865--6831Chr05:19274624..19274648 (25 bp)
GTTTGCTTCAACTATTAAGGGCTTG
LOC_Os05g33010
Target Sequence 
GAATGAACTTCTATGCATTGGCACTGGATGCCCGTATTCTTGTGTTAAAAGGGCACCTCACGCGTTTGCATTTGCCGATG
ACACTGGTACAGCACATGCATCATCTCAAGGTCACTATGATGACTACAATGTCCAACTTGCTGTTGGGCAGTGTCCAAGN
AAGTGCATATACTATGTCACGCCCTGCCAACGTACTATTTTGGAGGAAATTCTTGCAAGTGTGTTGATGACTCCATACGA
CCTCTCTGAAGCAGCAGTTCTGGATTCTCTCTTATCAAAAGCAATGTTTGAGAATAACAGGTACAAGAAGCCGAAAAGAG
AAACAAAATCGTCTTCTGATTATGTTGACTGGATGTGATCCACTCTATAGCACAGTTAGAGGGTTTAAGATGNTATTATG
TAAATATTATTGTAGGGCAAACCGTGAGTGGTAGTTGTTTGCTTCAACTATTAAGGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11972.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis