Browse Element(s) Details


Os.12013.3.S1_at

Description gb:NM_187299.1
DB_XREF= gi:34901683
GEN=P0434A03.6
TID=Os.12013.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.6 (P0434A03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0434A03.6 (P0434A03.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2961011/11Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29590OsAffx.10637.1.S1_s_at6/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.3.S1_s_at4/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.4.S1_s_at2/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12013.3.S1_at--861--5551Chr07:17405974..17405998 (25 bp)
GAAAGCTTTACTGTATCCTTCAGTT
LOC_Os07g29610
Os.12013.3.S1_at--434--9751Chr07:17406013..17406037 (25 bp)
TAATTATTCTTTGGGTGCTGACAAC
LOC_Os07g29610
Os.12013.3.S1_at--201--7771Chr07:17406026..17406050 (25 bp)
GGTGCTGACAACAACGATGCCCTAA
LOC_Os07g29610
Os.12013.3.S1_at--690--6351Chr07:17406041..17406065 (25 bp)
GATGCCCTAATCCTCATGGAAACAT
LOC_Os07g29610
Os.12013.3.S1_at--1100--5951Chr07:17406089..17406113 (25 bp)
GAGAATCTTTCTACTTCTGACCTGC
LOC_Os07g29610
Os.12013.3.S1_at--575--8931Chr07:17406106..17406130 (25 bp)
TGACCTGCTTTTCCTGAACAGTGCT
LOC_Os07g29610
Os.12013.3.S1_at--642--2131Chr07:17406123..17406147 (25 bp)
ACAGTGCTTGTCTAGATATTGCGGA
LOC_Os07g29610
Os.12013.3.S1_at--197--7951Chr07:17406561..17406585 (25 bp)
GGAGGCTTCTAACAAGTCGTTTGAC
LOC_Os07g29610
Os.12013.3.S1_at--608--10731Chr07:17406589..17406613 (25 bp)
TTGCATGTACAAACTTTCTGACCTG
LOC_Os07g29610
Os.12013.3.S1_at--298--10611Chr07:17406604..17406628 (25 bp)
TTCTGACCTGTTGCTACGATACGCA
LOC_Os07g29610
Os.12013.3.S1_at--748--1391Chr07:17406992..17407137 (25 bp)
AGACTCCCTTAAGTGGTATCTGATA
LOC_Os07g29610
Target Sequence 
GAAAGCTTTACTGTATCCTTCAGTTTATCTGTTTATTTTTAATTATTCTTTGGGTGCTGACAACAACGATGCCCTAATCC
TCATGGAAACATCGAAAAGATCCACAGAATGTTATGAGAATCTTTCTACTTCTGACCTGCTTTTCCTGAACAGTGCTTGT
CTAGATATTGCGGACTGGCTCCAACAGTATTGGGTGGGAAAATTGACCCTGCTCTTTTTGAAGTCCTCTATGCTTCTCAG
CATGCTATCTTCTTCTTTGCTAGGCTTCCACAGATATGGAAGAATTTTATGCATTTTGTACCAATTTTGTGAGTGGAGGC
TTCTAACAAGTCGTTTGACAATTTGCATGTACAAACTTTCTGACCTGTTGCTACGATACGCAGAACAAGGGCACTGGCGA
GCTGAGCTTTCTGACCTGTTTCATGAACTTTGCTGGTTCCATAGTAAGAGTGTTCACCAGCATCCAGGAGAAGACTCCCT
TAAGTGGTATCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12013.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis