Browse Element(s) Details


Os.12029.1.S1_a_at

Description gb:AK066113.1
DB_XREF= gi:32976131
TID=Os.12029.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051I09, full insert sequence.
FL= gb:AK066113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0629010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06300Os.15230.1.S1_at11/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06300Os.49478.1.S1_at1/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06310OsAffx.27470.1.S1_at11/116+2928391..2930982hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12029.1.S1_a_at--904--3011Chr06:2908407..2908431 (25 bp)
AATCCAAGTACAAGTCCGCCCGCAT
LOC_Os06g06290
Os.12029.1.S1_a_at--214--9891Chr06:2908366..2908390 (25 bp)
TACTCCGGCGTCTACGACATGGTCC
LOC_Os06g06290
Os.12029.1.S1_a_at--1019--8351Chr06:2908360..2908384 (25 bp)
GGCGTCTACGACATGGTCCGCAACC
LOC_Os06g06290
Os.12029.1.S1_a_at--885--8231NONE
GGCAACTACGGATTTAGCACGGTGT
NONE
Os.12029.1.S1_a_at--852--7931Chr06:2907536..2907560 (25 bp)
GGATTTAGCACGGTGTTCGAGACGT
LOC_Os06g06290
Os.12029.1.S1_a_at--1112--6691Chr06:2907522..2907546 (25 bp)
GTTCGAGACGTGCTGCGGGTCAGGC
LOC_Os06g06290
Os.12029.1.S1_a_at--997--3471Chr06:2907502..2907526 (25 bp)
CAGGCGGCGGCAAGTTCAACTACAA
LOC_Os06g06290
Os.12029.1.S1_a_at--774--3271Chr06:2907477..2907501 (25 bp)
CAACAACGCGAGGTGTGGGATGTCA
LOC_Os06g06290
Os.12029.1.S1_a_at--230--5451Chr06:2907300..2907324 (25 bp)
GAACGAGCCATTAGTTAATTTATTA
LOC_Os06g06290
Os.12029.1.S1_a_at--319--8771Chr06:2907220..2907244 (25 bp)
TGTTTGGGTTCTTGATTTTTATTTG
LOC_Os06g06290
Os.12029.1.S1_a_at--209--10371Chr06:2907205..2907229 (25 bp)
TTTTTATTTGGGTGGCATATATGGT
LOC_Os06g06290
Target Sequence 
AATCCAAGTACAAGTCCGCCCGCATCATGTACGCCGACTTCTACTCCGGCGTCTACGACATGGTCCGCAACCCCGGCAAC
TACGGATTTAGCACGGTGTTCGAGACGTGCTGCGGGTCAGGCGGCGGCAAGTTCAACTACAACAACAACGCGAGGTGTGG
GATGTCAGGCGCATCAGCGTGCTCCAACCCGGCGTCGCATCTTAGCTGGGACGGCATCCACCTCACCGAGGCAGCTTACA
AGCAGATCACTGACGGCTGGCTCAACGGCCCGTACTGTAGCCCGGCCATCCTCCACAGCTAAGGCAAAATGACTGGAAAG
AACGAGCCATTAGTTAATTTATTACTTTATTATTAAGGCTGGTGTTTATTAATTAAGCGGGAATTAATTAAAGGGGAATT
GTTTGGGTTCTTGATTTTTATTTGGGTGGCATATATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12029.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis