Browse Element(s) Details


Os.12052.1.S1_at

Description gb:AK072713.1
DB_XREF= gi:32982736
TID=Os.12052.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139G03, full insert sequence.
FL= gb:AK072713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2951411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12052.1.S1_at--516--931Chr10:15006318..15006342 (25 bp)
AGGACCCGCTAGCTTGTATACTTGG
LOC_Os10g29514
Os.12052.1.S1_at--961--7891Chr10:15006341..15006365 (25 bp)
GGTTCTTCAGACAGCAACATACAAA
LOC_Os10g29514
Os.12052.1.S1_at--858--9111Chr10:15006466..15006490 (25 bp)
TGCTGACAAGTTTTCTGCGCTGTGA
LOC_Os10g29514
Os.12052.1.S1_at--525--9491Chr10:15006479..15006503 (25 bp)
TCTGCGCTGTGATTTGTGATATCTA
LOC_Os10g29514
Os.12052.1.S1_at--915--9071Chr10:15006527..15006551 (25 bp)
TGCTAGGATTGTCCTTCGAACTTCC
LOC_Os10g29514
Os.12052.1.S1_at--714--7651Chr10:15006583..15006607 (25 bp)
GGGATGAATATTTTGCGTCCACGAG
LOC_Os10g29514
Os.12052.1.S1_at--859--5491Chr10:15006653..15006677 (25 bp)
GAACATGTGGTTTTGACTTGCGATC
LOC_Os10g29514
Os.12052.1.S1_at--824--10751Chr10:15006665..15006689 (25 bp)
TTGACTTGCGATCTGACCACTGCAG
LOC_Os10g29514
Os.12052.1.S1_at--848--5851Chr10:15006679..15006703 (25 bp)
GACCACTGCAGATTATTTGCCTGAA
LOC_Os10g29514
Os.12052.1.S1_at--369--211Chr10:15006693..15006717 (25 bp)
ATTTGCCTGAAACCTAATGTGCCTA
LOC_Os10g29514
Os.12052.1.S1_at--297--2991Chr10:15006708..15006732 (25 bp)
AATGTGCCTATCTACAGTTCTGCGC
LOC_Os10g29514
Target Sequence 
AGGACCCGCTAGCTTGTATACTTGGTTCTTCAGACAGCAACATACAAAGCAACAAGTCTGCTGAGCACACTGGTACTACC
GTGAAGAGAAGGGAGGTGCGAGCTCACAGAAGAAGCCACCGGCATCATCATCATCATCATCATCGACATGCTGACAAGTT
TTCTGCGCTGTGATTTGTGATATCTATATCAGAGATTCAGATGTGTGAATGCTAGGATTGTCCTTCGAACTTCCAGTCGC
AGGAGGCCGATAGGAGTAGATTTCTGGGATGAATATTTTGCGTCCACGAGCAAAATGAAGCTCATATGGATGTTCGATGT
TTCTTCCATGTCCAGGAACATGTGGTTTTGACTTGCGATCTGACCACTGCAGATTATTTGCCTGAAACCTAATGTGCCTA
TCTACAGTTCTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis