Browse Element(s) Details


Os.12062.2.S1_at

Description gb:AK061285.1
DB_XREF= gi:32971303
TID=Os.12062.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Homo sapiens HSPC025-like protein (P0452F10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-G09, full insert sequence.
FL= gb:AK061285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1287011/11Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12062.2.S1_at--404--8851Chr01:7124546..7124570 (25 bp)
TGATGCGCAGGTACTAAAGTTCATT
LOC_Os01g12870
Os.12062.2.S1_at--416--2331Chr01:7124531..7124555 (25 bp)
AAAGTTCATTGACTGCCTTGGAATC
LOC_Os01g12870
Os.12062.2.S1_at--124--5731Chr01:7124521..7124545 (25 bp)
GACTGCCTTGGAATCAATGGATACT
LOC_Os01g12870
Os.12062.2.S1_at--549--7951Chr01:7124503..7124527 (25 bp)
GGATACTTCAATCTACAGTGCCATG
LOC_Os01g12870
Os.12062.2.S1_at--37--9871Chr01:7124490..7124514 (25 bp)
TACAGTGCCATGTTAGACGCAGAGT
LOC_Os01g12870
Os.12062.2.S1_at--993--5791Chr01:7124475..7124499 (25 bp)
GACGCAGAGTTTTTTGCTCTTCTAT
LOC_Os01g12870
Os.12062.2.S1_at--759--6071Chr01:7124469..7124493 (25 bp)
GAGTTTTTTGCTCTTCTATGTTCAA
LOC_Os01g12870
Os.12062.2.S1_at--772--3311Chr01:7124431..7124455 (25 bp)
CACATGAAATGCGTCCTAGGATATA
LOC_Os01g12870
Os.12062.2.S1_at--828--8891Chr01:7124381..7124405 (25 bp)
TGAGTCATGTTGTACAGCCACACCT
LOC_Os01g12870
Os.12062.2.S1_at--575--4391Chr01:7124365..7124389 (25 bp)
GCCACACCTAGGATATAAGCATTCT
LOC_Os01g12870
Os.12062.2.S1_at--953--331Chr01:7124307..7124331 (25 bp)
TTAATTCACTTTCTTGAAATTGCCC
LOC_Os01g12870
Target Sequence 
TGATGCGCAGGTACTAAAGTTCATTGACTGCCTTGGAATCAATGGATACTTCAATCTACAGTGCCATGTTAGACGCAGAG
TTTTTTGCTCTTCTATGTTCAAATTGTACTTAAATCACATGAAATGCGTCCTAGGATATAAACATTATTTCCAGTAAAAT
TAGATTGAGTCATGTTGTACAGCCACACCTAGGATATAAGCATTCTTTTCAGTAAAACCCCATTTTATGAATTTATTTTT
TAATTCACTTTCTTGAAATTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12062.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis