Browse Element(s) Details


Os.12081.2.S1_s_at

Description gb:NM_191516.1
DB_XREF= gi:34910115
GEN=B1100D10.33
TID=Os.12081.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.33 (B1100D10.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1100D10.33 (B1100D10.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5748011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12081.2.S1_s_at--1127--671Chr01:33542624..33542648 (25 bp)
ATGAGAAATGCAGGATCCCACCGAC
LOC_Os01g57480
Os.12081.2.S1_s_at--899--6411Chr01:33542778..33542802 (25 bp)
GATCTCGTTGATCCATCAACACGTG
LOC_Os01g57480
Os.12081.2.S1_s_at--191--9711Chr01:33542793..33542817 (25 bp)
TCAACACGTGATGCATATCCTGAGC
LOC_Os01g57480
Os.12081.2.S1_s_at--938--4951Chr01:33542805..33542829 (25 bp)
GCATATCCTGAGCATAGGGTACTGA
LOC_Os01g57480
Os.12081.2.S1_s_at--85--291Chr01:33542818..33542842 (25 bp)
ATAGGGTACTGAGATGTGTTCATGT
LOC_Os01g57480
Os.12081.2.S1_s_at--848--1351Chr01:33542861..33542885 (25 bp)
AGAGAACGCTGTTGATCGTCCCACT
LOC_Os01g57480
Os.12081.2.S1_s_at--884--6391Chr01:33542874..33542898 (25 bp)
GATCGTCCCACTATGAGCGATGTCA
LOC_Os01g57480
Os.12081.2.S1_s_at--299--5891Chr01:33542888..33542912 (25 bp)
GAGCGATGTCATCTCAATGCTTACT
LOC_Os01g57480
Os.12081.2.S1_s_at--113--7131Chr01:33542895..33542919 (25 bp)
GTCATCTCAATGCTTACTAGCGAAA
LOC_Os01g57480
Os.12081.2.S1_s_at--1096--1991Chr01:33542910..33542934 (25 bp)
ACTAGCGAAAGCATCACCTTACCTG
LOC_Os01g57480
Os.12081.2.S1_s_at--972--5551Chr01:33542916..33542940 (25 bp)
GAAAGCATCACCTTACCTGATCCTA
LOC_Os01g57480
Target Sequence 
ATGAGAAATGCAGGATCCCACCGACCCTGGGAGTTATGGAGGGAAGGCAGATGGTTTGATCTCGTTGATCCATCAACACG
TGATGCATATCCTGAGCATAGGGTACTGAGATGTGTTCATGTTGGCCTGATGTGCGTCCAAGAGAACGCTGTTGATCGTC
CCACTATGAGCGATGTCATCTCAATGCTTACTAGCGAAAGCATCACCTTACCTGATCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12081.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis