Browse Element(s) Details


Os.12159.1.S1_s_at

Description gb:AK068453.1
DB_XREF= gi:32978471
TID=Os.12159.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151K19, full insert sequence.
FL= gb:AK068453.1 gb:AK070221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1590011/11SH3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12159.1.S1_s_at--1109--6151Chr03:8764574..8764598 (25 bp)
GAGGTTCCTTCTGTGATCTTAGTAG
LOC_Os03g15900
Os.12159.1.S1_s_at--482--2091Chr03:8764602..8764626 (25 bp)
ACATAACCTTTTTTGAGCTCCCTAG
LOC_Os03g15900
Os.12159.1.S1_s_at--196--8911Chr03:8764615..8764639 (25 bp)
TGAGCTCCCTAGCATTTGACAGGCA
LOC_Os03g15900
Os.12159.1.S1_s_at--481--8011Chr03:8764652..8764676 (25 bp)
GGAGGCCAAATTCAATCATCGTGAT
LOC_Os03g15900
Os.12159.1.S1_s_at--909--6831Chr03:8764711..8764735 (25 bp)
GTTTCTTTGCTTTATACACACCACG
LOC_Os03g15900
Os.12159.1.S1_s_at--134--2171Chr03:8764728..8764752 (25 bp)
ACACCACGAGTCCATTCAATTCATT
LOC_Os03g15900
Os.12159.1.S1_s_at--918--7871Chr03:8764784..8764808 (25 bp)
GGTTTTACCTTTCGTGTGCTATTCT
LOC_Os03g15900
Os.12159.1.S1_s_at--730--9451Chr03:8764806..8764830 (25 bp)
TCTGGCCCGTCTGTTATGATTGAAA
LOC_Os03g15900
Os.12159.1.S1_s_at--623--8951Chr03:8764826..8764850 (25 bp)
TGAAAGACGCAGTTTACTCCTCTAG
LOC_Os03g15900
Os.12159.1.S1_s_at--200--1991Chr03:8764906..8764930 (25 bp)
ACTGCTGAAGGCTGTATCTTGCTCC
LOC_Os03g15900
Os.12159.1.S1_s_at--590--2231Chr03:8764994..8765018 (25 bp)
AAATTTTGTCTTGTGCGGAGTATAC
LOC_Os03g15900
Target Sequence 
GAGGTTCCTTCTGTGATCTTAGTAGTGCACATAACCTTTTTTGAGCTCCCTAGCATTTGACAGGCACATGTCCTTGTTGG
AGGCCAAATTCAATCATCGTGATGTCTGTAAGACGCAGCAATTTTCNTGCTGGTTGTGTTTCTTTGCTTTATACACACCA
CGAGTCCATTCAATTCATTGTTTATGTGTAGAGATGTACACGTGCTTCGGGGTTTTACCTTTCGTGTGCTATTCTGGCCC
GTCTGTTATGATTGAAAGACGCAGTTTACTCCTCTAGNTCTCCATCAGATAGGCATTATTTTGTCAAATTGTTGCTCTAT
TGGAGGCTGTAAACTGCTGAAGGCTGTATCTTGCTCCCCACCATTATTTCGGTCTTGTTTATGGTGATTCAGTAGAAGTA
GTAGGCCTGTTAATTTGTGTAAATTTTGTCTTGTGCGGAGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12159.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis