Browse Element(s) Details

Os.12198.2.S1_x_at

Description

gb:AK059211.1
DB_XREF= gi:32969229
TID=Os.12198.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B12, full insert sequence.
FL= gb:AK059211.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20370	10/11	microtubule-associated protein MAP65-1a, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20310	Os.49898.2.S1_at	11/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20310	Os.49898.1.S1_at	10/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20320	Os.5054.1.S1_at	11/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20320	Os.27772.1.S1_x_at	1/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20330	OsAffx.15514.1.S1_at	11/11	6	+	11681267..11682206	expressed protein
LOC_Os06g20340	Os.6777.1.S1_at	10/11	6	+	11683184..11686911	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein
LOC_Os06g20400	Os.18614.1.S1_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_s_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_at	10/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410	Os.24334.1.A1_at	11/11	6	+	11724807..11733595	BAH domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000910	biological_process	cytokinesis
GO:0000911	biological_process	cytokinesis by cell plate formation
GO:0001578	biological_process	microtubule bundle formation
GO:0007020	biological_process	microtubule nucleation
GO:0031116	biological_process	positive regulation of microtubule polymerization
GO:0051322	biological_process	anaphase
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0005739	cellular_component	mitochondrion
GO:0005819	cellular_component	spindle
GO:0005874	cellular_component	microtubule
GO:0009524	cellular_component	phragmoplast
GO:0009536	cellular_component	plastid
GO:0010005	cellular_component	cortical microtubule (sensu Viridiplantae)
GO:0008017	molecular_function	microtubule binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12198.2.S1_x_at--1009--957	1	Chr06:11697798..11697822 (25 bp)	TCTTGCCCTGGATCTCATTGAGCAA	LOC_Os06g20370
Os.12198.2.S1_x_at--440--141	1	Chr06:11697599..11697623 (25 bp)	AGACATCTATGCTGGTGCTCACATG	LOC_Os06g20370
Os.12198.2.S1_x_at--932--81	1	Chr06:11697577..11697601 (25 bp)	ATGGTAATAGATACAGCTGCTGCCC	LOC_Os06g20370
Os.12198.2.S1_x_at--100--651	1	Chr06:11697235..11697259 (25 bp)	GATATAACTCAAGCCGAGGTGCCCA	LOC_Os06g20370
Os.12198.2.S1_x_at--504--103	1	Chr06:11697219..11697243 (25 bp)	AGGTGCCCACCTGAATCTCAAACGT	LOC_Os06g20370
Os.12198.2.S1_x_at--128--259	1	Chr06:11697199..11697223 (25 bp)	AACGTGCTGAAAAGGCTCGGATTCT	LOC_Os06g20370
Os.12198.2.S1_x_at--649--511	1	Chr06:11696963..11696987 (25 bp)	GCACTTGTTGAAACTCTGGTGGCAA	LOC_Os06g20370
Os.12198.2.S1_x_at--635--425	1	Chr06:11696916..11696940 (25 bp)	CCGTGGTCTGTCCTTTATGTATGAT	LOC_Os06g20370
Os.12198.2.S1_x_at--981--691	1	NONE	GTATGATGGTGTACCCCTTCTCATC	NONE
Os.12198.2.S1_x_at--935--571	1	Chr06:11695972..11695996 (25 bp)	GACTCTGTAGTATAGCCTTTGCTGG	LOC_Os06g20370
Os.12198.2.S1_x_at--191--9	1	Chr06:11695936..11695960 (25 bp)	ATTCGTTAACCTGTTTGCTACATGT	LOC_Os06g20370

Target Sequence

TCTTGCCCTGGATCTCATTGAGCAAGCTGAGATAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGGAAA
TAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACATGGTAATAGATACAGCTGCTGCCCATGAA
AAAATATTGGCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGC
AAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGC
TTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCT
CGGATTCTTGTCAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGGGAGGAGAGCCGTGGTCT
GTCCTTTATGTATGATGGTGTACCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAA
CCTGTTTGCTACATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis