Browse Element(s) Details


Os.12293.4.S1_x_at

Description gb:NM_193986.1
DB_XREF= gi:34915055
GEN=P0025H06.12
TID=Os.12293.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12293 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative alpha-amylase (P0025H06.12), mRNA.
PROD=putative alpha-amylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2552010/11hypothetical protein
LOC_Os01g254846/11Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os02g527303/11Ferredoxin-nitrite reductase, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed
LOC_Os01g25540Os.22341.1.S1_at11/111+14463287..14464034Rapid ALkalinization Factor family protein, expressed
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein
LOC_Os01g25560Os.10667.1.S1_at11/111+14468875..14469639rapid alkalinization factor, putative, expressed
LOC_Os01g25569NANA1+14470751..14472417NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019419biological_processsulfate reduction
GO:0005739cellular_componentmitochondrion
GO:0009536cellular_componentplastid
GO:0016002molecular_functionsulfite reductase activity
GO:0047889molecular_functionferredoxin-nitrate reductase activity
GO:0050311molecular_functionsulfite reductase (ferredoxin) activity
GO:0050421molecular_functionnitrite reductase (NO-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12293.4.S1_x_at--405--4511Chr01:14445042..14445066 (25 bp)
GCCGATACTGGGTGCTCAAGGAGAA
LOC_Os01g25520
Os.12293.4.S1_x_at--696--2831Chr01:14445065..14445088 (24 bp)
AAGTACCAGGCTGGGCTGAACCCGA
LOC_Os01g25520
Os.12293.4.S1_x_at--188--1711Chr01:14445069..14445097 (25 bp)
ACCAGGCTGGGCTGAACCCGAGAAG
LOC_Os01g25520
Os.12293.4.S1_x_at--93--8212Chr01:14445108..14445132 (25 bp)
GGAAGGAGCCCATGTCATTGTTCAT
LOC_Os01g25520
Os.12293.4.S1_x_at--40--3612Chr01:14445123..14445147 (25 bp)
CATTGTTCATGGAGGGCGGCATCAA
LOC_Os01g25520
Os.12293.4.S1_x_at--575--1593Chr01:14445150..14445174 (25 bp)
AGCTCGCCAAGATGCCCATGGAGGA
LOC_Os01g25520
Os.12293.4.S1_x_at--445--1293Chr01:14445174..14445198 (25 bp)
AGATCGAGGCCGACAAGCTCTCCAA
LOC_Os01g25520
Os.12293.4.S1_x_at--193--4233Chr01:14445183..14445207 (25 bp)
CCGACAAGCTCTCCAAGGAGGACAT
LOC_Os01g25520
Os.12293.4.S1_x_at--455--1912Chr01:14445210..14445234 (25 bp)
ACGTGCGGCTCAAGTGGCTCGGCCT
LOC_Os01g25520
Os.12293.4.S1_x_at--619--5151NONE
GCAAGCATCAGTACCGACCGGATTC
NONE
Os.12293.4.S1_x_at--1003--9951Chr01:14445795..14445818 (24 bp)
TACCGACCGGATTCAGTGGCCTTGA
LOC_Os01g25520
Target Sequence 
GCCGATACTGGGTGCTCAAGGAGAAGTACCAGGCTGGGCTGAACCCGAGAAGGTGAAGCTCGGGAAGGAGCCCATGTCAT
TGTTCATGGAGGGCGGCATCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGAC
ATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGTACCGACCGGATTCAGTGGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12293.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis