Browse Element(s) Details


Os.12305.1.S1_at

Description gb:AY226827.1
DB_XREF= gi:29293693
GEN=Rab7
TID=Os.12305.1
CNT=51
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12305 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) small GTP binding protein (Rab7) mRNA, complete cds.
PROD=small GTP binding protein
FL= gb:AK112031.1 gb:AY226827.1 gb:AK111896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4405011/11Ras-related protein Rab7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44000NANA5+25514674..25518118retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44010NANA5+25518435..25521378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44020Os.52467.1.S1_at11/115+25525086..25527617expressed protein
LOC_Os05g44020Os.52467.1.S1_x_at11/115+25525086..25527617expressed protein
LOC_Os05g44020OsAffx.15097.1.S1_at1/115+25525086..25527617expressed protein
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12305.1.S1_at--318--5151Chr05:25539132..25539263 (25 bp)
GCAACAGCCGTGTGGTCTCTGAGAA
LOC_Os05g44050
Os.12305.1.S1_at--268--551Chr05:25539298..25539322 (25 bp)
ATCCCATACTTTGAGACATCTGCCA
LOC_Os05g44050
Os.12305.1.S1_at--486--1431Chr05:25539393..25539730 (25 bp)
AGAACTGTATGTGCCGGACACCGTG
LOC_Os05g44050
Os.12305.1.S1_at--806--6431Chr05:25539759..25539783 (25 bp)
GATCATCAGGCTGCTGCTAGAACAT
LOC_Os05g44050
Os.12305.1.S1_at--316--4751Chr05:25539798..25539822 (25 bp)
GCTGAGACTGTTGGCTATGCGGTAA
LOC_Os05g44050
Os.12305.1.S1_at--601--2531Chr05:25539826..25539850 (25 bp)
AACTACCTTTGGACATTGCTGTGCC
LOC_Os05g44050
Os.12305.1.S1_at--218--7371Chr05:25539857..25539881 (25 bp)
GTGACTCTCAAGGACCCATTCGTAA
LOC_Os05g44050
Os.12305.1.S1_at--940--91Chr05:25539874..25539898 (25 bp)
ATTCGTAACCTTTTCAATCACCTCA
LOC_Os05g44050
Os.12305.1.S1_at--517--3071Chr05:25539889..25539913 (25 bp)
AATCACCTCATGTACCCAGTTAAGA
LOC_Os05g44050
Os.12305.1.S1_at--912--2811Chr05:25539910..25539934 (25 bp)
AAGATTGATGCGTCTGGCCTGAGTT
LOC_Os05g44050
Os.12305.1.S1_at--1096--6831Chr05:25540021..25540045 (25 bp)
GTTTCTCCATTATGGTTCTCTCTGA
LOC_Os05g44050
Target Sequence 
GCAACAGCCGTGTGGTCTCTGAGAAGAAGGCAAAGGCATGGTGTGCCTCTAAAGGGAATATCCCATACTTTGAGACATCT
GCCAAGGATGGTACAAACGTGGAGGAGGCTTTCCAGTGCATTGTAAAGAATGCTCTGAAGAATGAACCAGAGGAAGAACT
GTATGTGCCGGACACCGTGGATGTGGTGGGTGGCAACCGGGCCCAAAGATCATCAGGCTGCTGCTAGAACATGATGGACC
ATGAGGGCTGAGACTGTTGGCTATGCGGTAACAGAACTACCTTTGGACATTGCTGTGCCTCCATGGTGACTCTCAAGGAC
CCATTCGTAACCTTTTCAATCACCTCATGTACCCAGTTAAGATTGATGCGTCTGGCCTGAGTTGTCAAATTTGTGGATGT
TGTGCANTTTATCAGTAGCGTCATATCTTTGTGAATACAATCGGTGAAATAAGTCGAGTGTAAACTGAAGTTTCTCCATT
ATGGTTCTCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis