Browse Element(s) Details


Os.12382.1.S1_at

Description gb:AK121189.1
DB_XREF= gi:37990812
TID=Os.12382.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085O07, full insert sequence.
FL= gb:AK121189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g329502/11Ribosome associated membrane protein RAMP4 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12382.1.S1_at--880--371Chr12:19877800..19877821 (22 bp)
ATCACCGGCGTTCACGAGGATGACT
NONE
Os.12382.1.S1_at--19--5231Chr12:19876224..19876248 (25 bp)
GAATGACTACCCTGTTGGACCCATG
LOC_Os12g32950
Os.12382.1.S1_at--423--3611Chr12:19876196..19876220 (25 bp)
CTTGGGTTCTTCATTTTTGTCGTCA
LOC_Os12g32950
Os.12382.1.S1_at--302--10411Chr12:19876129..19876206 (25 bp)
TTTTGTCGTCATTGGATCATCCTTG
NONE
Os.12382.1.S1_at--1001--2191Chr12:19875044..19875068 (25 bp)
AACTAGTGGCGGGATGGCTTAAATT
NONE
Os.12382.1.S1_at--944--4731Chr12:19874979..19875003 (25 bp)
GCTGTACCTGTACTTTGTAGTGAAG
NONE
Os.12382.1.S1_at--43--6871Chr12:19874955..19874979 (25 bp)
GTTTGTTCCTGGATGATATCGTGTA
NONE
Os.12382.1.S1_at--544--8751Chr12:19874934..19874958 (25 bp)
TGTAGAGGGTCCATGTTGTGTCCGT
NONE
Os.12382.1.S1_at--581--6631Chr12:19874920..19874944 (25 bp)
GTTGTGTCCGTTTGCATTTTACTAA
NONE
Os.12382.1.S1_at--49--6631Chr12:19874882..19874906 (25 bp)
GTTGGTACCTGAATCTTACAGACTT
NONE
Os.12382.1.S1_at--1073--3131Chr12:19874840..19874864 (25 bp)
AATTGAACTTTGATCTGGAGACTAA
NONE
Target Sequence 
ATCACCGGCGTTCACGAGGATGACTACCTCAAGGCGTCTTGCTGACAGGAAGAGCGCAAAGTTCCAGAAGAATATCACGA
AGAGGGGTTCAGTGCCTGAGACTACTGTGAAGAAGGGGAATGACTACCCTGTTGGACCCATGGTGCTTGGGTTCTTCATT
TTTGTCGTCATTGGATCATCCTTGTTCCAGATAATCAGGACGGCAACTAGTGGCGGGATGGCTTAAATTGGAGCTAAATT
CAGTTATTTATGCTGTGTCTGAGAGAGAGGCTGTACCTGTACTTTGTAGTGAAGTTTGTTCCTGGATGATATCGTGTAGA
GGGTCCATGTTGTGTCCGTTTGCATTTTACTAAATCTAAACTAGATGTTGGTACCTGAATCTTACAGACTTTAAACTTAA
ATGGATATAATTGAACTTTGATCTGGAGACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis