Browse Element(s) Details


Os.12420.3.S1_at

Description gb:AK065009.1
DB_XREF= gi:32975027
TID=Os.12420.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pirin (OJ1484_G09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E24, full insert sequence.
FL= gb:AK065009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0357911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein
LOC_Os08g03590NANA8+1671548..1673150hypothetical protein
LOC_Os08g03600OsAffx.29016.1.S1_at11/118+1675189..1677799magnesium transporter CorA, putative, expressed
LOC_Os08g03610Os.14929.1.S1_at10/118+1679908..1682459LSD1 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12420.3.S1_at--376--211Chr08:1669852..1669876 (25 bp)
ATTTGCTGTGATGCTATGTTGCTTC
LOC_Os08g03579
Os.12420.3.S1_at--671--8811Chr08:1669868..1669892 (25 bp)
TGTTGCTTCTTGCTTCTGCGTTCCA
LOC_Os08g03579
Os.12420.3.S1_at--534--10591Chr08:1669881..1669905 (25 bp)
TTCTGCGTTCCAGTTTCTGTTCACC
LOC_Os08g03579
Os.12420.3.S1_at--409--3871Chr08:1669897..1669921 (25 bp)
CTGTTCACCCTTGTGTTCTTTGAGA
LOC_Os08g03579
Os.12420.3.S1_at--410--8311Chr08:1669925..1669949 (25 bp)
GGCTACTGTGTTGTGATCTTTTGCA
LOC_Os08g03579
Os.12420.3.S1_at--496--6631Chr08:1669934..1669958 (25 bp)
GTTGTGATCTTTTGCAGTTTCTTAG
LOC_Os08g03579
Os.12420.3.S1_at--662--5031Chr08:1669947..1669971 (25 bp)
GCAGTTTCTTAGCTATGCTACCATG
LOC_Os08g03579
Os.12420.3.S1_at--743--631Chr08:1669961..1669985 (25 bp)
ATGCTACCATGCTTATCGGCTAATT
LOC_Os08g03579
Os.12420.3.S1_at--482--491Chr08:1669975..1669999 (25 bp)
ATCGGCTAATTTTCATCAGTTAACT
LOC_Os08g03579
Os.12420.3.S1_at--400--6771Chr08:1669993..1670017 (25 bp)
GTTAACTTTCTGTGATCTGATACTT
LOC_Os08g03579
Os.12420.3.S1_at--540--6411Chr08:1670006..1670030 (25 bp)
GATCTGATACTTCTGTTTGTATTGT
LOC_Os08g03579
Target Sequence 
ATTTGCTGTGATGCTATGTTGCTTCTTGCTTCTGCGTTCCAGTTTCTGTTCACCCTTGTGTTCTTTGAGAGAAGGCTACT
GTGTTGTGATCTTTTGCAGTTTCTTAGCTATGCTACCATGCTTATCGGCTAATTTTCATCAGTTAACTTTCTGTGATCTG
ATACTTCTGTTTGTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12420.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis