Browse Element(s) Details


Os.12497.1.S1_at

Description gb:AK102981.1
DB_XREF= gi:32988190
TID=Os.12497.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115O13, full insert sequence.
FL= gb:AK102981.1 gb:AK103240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12497.1.S1_at--614--6651Chr04:35104342..35104366 (25 bp)
GTTGATCGGTCATTTGCTTGTTTGT
LOC_Os04g59400
Os.12497.1.S1_at--406--1331Chr04:35104406..35104430 (25 bp)
AGAGGTCACAAATTCCATGCTGGTC
LOC_Os04g59400
Os.12497.1.S1_at--363--7691Chr04:35104450..35104474 (25 bp)
GGGTAGCTCTAATTTTACTGCGAAC
LOC_Os04g59400
Os.12497.1.S1_at--705--2451Chr04:35104498..35104522 (25 bp)
AAAATTCTCTGCTGCCTTTGTGCTC
LOC_Os04g59400
Os.12497.1.S1_at--87--1131Chr04:35104553..35104577 (25 bp)
AGTGAAGCTCTGTGTCACCGTGCAG
LOC_Os04g59400
Os.12497.1.S1_at--87--1791Chr04:35104569..35104593 (25 bp)
ACCGTGCAGCTCATCAGGCAGAGAT
LOC_Os04g59400
Os.12497.1.S1_at--184--831Chr04:35104592..35104616 (25 bp)
ATGGTTCATGGCTGGCTGCACGGAA
LOC_Os04g59400
Os.12497.1.S1_at--892--10011Chr04:35104619..35104643 (25 bp)
TAGCAACAGTCACTTGATTCCGCGC
LOC_Os04g59400
Os.12497.1.S1_at--63--4571Chr04:35104640..35104664 (25 bp)
GCGCCGCCGACCTAACAAGAGAGAT
LOC_Os04g59400
Os.12497.1.S1_at--688--2191Chr04:35104703..35104727 (25 bp)
ACACAATGCGGTGCTTTGGTACAAC
LOC_Os04g59400
Os.12497.1.S1_at--353--9111Chr04:35104796..35104820 (25 bp)
TGCTGCACTGCATACATCATTCAAG
LOC_Os04g59400
Target Sequence 
GTTGATCGGTCATTTGCTTGTTTGTATGTTGTGGTGTAGTAAGTAGTAACAAATTTTGATCCCCAGAGGTCACAAATTCC
ATGCTGGTCTAGCGATGTGTTAGTAGCTGGGTAGCTCTAATTTTACTGCGAACAATATGAATCATGTTCGTCTAANAAAA
TTCTCTGCTGCCTTTGTGCTCCTGCTTTTGCTTTGTGAAGCGCAAAAGGACAGTGAAGCTCTGTGTCACCGTGCAGCTCA
TCAGGCAGAGATGGTTCATGGCTGGCTGCACGGAATCTAGCAACAGTCACTTGATTCCGCGCCGCCGACCTAACAAGAGA
GATGGAGCTGTTGATTGCAACAGCGTCTAAATTCAGAGTGCACACAATGCGGTGCTTTGGTACAACGCAATTGGATATTT
GGATGGATGCTATTTGGATGGTAATGACAAATGCACATCAACGGCATATTCTCCTGCTGCACTGCATACATCATTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis