Browse Element(s) Details


Os.12575.2.S1_at

Description gb:AK107041.1
DB_XREF= gi:32992250
TID=Os.12575.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g01970 (P0453E03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C03, full insert sequence.
FL= gb:AK107041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4672011/11Nucleolar protein Nop56, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12575.2.S1_at--976--8831Chr07:27927806..27927830 (25 bp)
TGATAAGCCTGCCAAGGTTGCTGCA
LOC_Os07g46720
Os.12575.2.S1_at--429--851Chr07:27927903..27927927 (25 bp)
ATGGCAGTCAATGGCAATCTCGAAC
LOC_Os07g46720
Os.12575.2.S1_at--888--8811Chr07:27927980..27928004 (25 bp)
TGTTGAGCCTAGGACAGCCACTGAA
LOC_Os07g46720
Os.12575.2.S1_at--271--7451Chr07:27928067..27928091 (25 bp)
GTGTCAAGGATAACATTGCTGCTCT
LOC_Os07g46720
Os.12575.2.S1_at--539--10711Chr07:27928082..27928106 (25 bp)
TTGCTGCTCTGGTTAGAGCTTCCTT
LOC_Os07g46720
Os.12575.2.S1_at--118--5931Chr07:27928097..27928121 (25 bp)
GAGCTTCCTTGTAACATTGCTGCTG
LOC_Os07g46720
Os.12575.2.S1_at--553--2071Chr07:27928110..27928134 (25 bp)
ACATTGCTGCTGTTCTGGGTATCAA
LOC_Os07g46720
Os.12575.2.S1_at--959--4951Chr07:27928180..27928204 (25 bp)
GCATATCACCTTGGATGGAGCCTTT
LOC_Os07g46720
Os.12575.2.S1_at--896--831Chr07:27928194..27928218 (25 bp)
ATGGAGCCTTTTCTTTTCAGATAGC
LOC_Os07g46720
Os.12575.2.S1_at--844--9971Chr07:27928224..27928248 (25 bp)
TACCATCTTATCGTAGTATCGCCTG
LOC_Os07g46720
Os.12575.2.S1_at--172--6951Chr07:27928236..27928260 (25 bp)
GTAGTATCGCCTGTGAAATCCCAAA
LOC_Os07g46720
Target Sequence 
TGATAAGCCTGCCAAGGTTGCTGCAGAAGAGACTGATCCAGAAAATGAGAATAAGAAGAAAAAGAAGCACAAGCTAGAGG
AGCCACAGGATCAGGAGATGGCAGTCAATGGCAATCTCGAACAAGATGAAACTCCCAAGAAGAAGAAAAAGAAGAAGCCG
GAGGCTTCAGAAGATGTTGAGCCTAGGACAGCCACTGAAGGAAAGAAGAGAAAGAAGAAAAAGTCCAAAACATTGTTGAT
AATGAGTCATGATCAACTTAAGTGTCAAGGATAACATTGCTGCTCTGGTTAGAGCTTCCTTGTAACATTGCTGCTGTTCT
GGGTATCAAAATTCTAGTTAGGGCCTAGGGGTTCCTCTAAGAGTTACATGTGATGCATATCACCTTGGATGGAGCCTTTT
CTTTTCAGATAGCTTAATTACCATCTTATCGTAGTATCGCCTGTGAAATCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12575.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis