Browse Element(s) Details


Os.12697.1.S1_at

Description gb:AF261277.1
DB_XREF= gi:8118436
GEN=EXPB9
TID=Os.12697.1
CNT=73
FEA=FLmRNA
TIER=FL+Stack
STK=28
UG=Os.12697 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB9) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AK070187.1 gb:AF261277.1 gb:AK099112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4009011/11Beta-expansin 1a precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12697.1.S1_at--318--6591Chr10:21136669..21136693 (25 bp)
GATTGCCAGCGTGGAGGCCCATGAA
LOC_Os10g40090
Os.12697.1.S1_at--837--5171Chr10:21136777..21136801 (25 bp)
GCAAGAGCCTCATCGCCAAAGACGT
LOC_Os10g40090
Os.12697.1.S1_at--1061--3271Chr10:21136793..21136817 (25 bp)
CAAAGACGTCATCCCGGTCAACTGG
LOC_Os10g40090
Os.12697.1.S1_at--362--591Chr10:21136818..21136842 (25 bp)
ATGCCAGACGCCATCTACGTATCAA
LOC_Os10g40090
Os.12697.1.S1_at--1134--2371Chr10:21136841..21136865 (25 bp)
AAACGTCCAGTTCTATTGAGATCGG
LOC_Os10g40090
Os.12697.1.S1_at--643--9411Chr10:21136862..21136886 (25 bp)
TCGGACGGAAACGATCCTCCTAATT
LOC_Os10g40090
Os.12697.1.S1_at--230--6371Chr10:21136874..21136898 (25 bp)
GATCCTCCTAATTTATTTCCCTATT
LOC_Os10g40090
Os.12697.1.S1_at--405--10631Chr10:21136936..21136960 (25 bp)
TTCCCGTTGTTAGAAATGGTTCCAT
LOC_Os10g40090
Os.12697.1.S1_at--464--191Chr10:21136959..21136983 (25 bp)
ATTTCCTCCTACAGCTTACTTTAAG
LOC_Os10g40090
Os.12697.1.S1_at--125--6891Chr10:21136996..21137020 (25 bp)
GTATATCTGCGCCATCTTGTAAGTT
LOC_Os10g40090
Os.12697.1.S1_at--831--3851Chr10:21137048..21137072 (25 bp)
CTGAGCATCTGATTCTCCGGGAAGA
LOC_Os10g40090
Target Sequence 
GATTGCCAGCGTGGAGGCCCATGAAGCTGTCGTGGGGCGCCATCTGGAGGATGGACACCGCCACGCCACTCAAGGCACCC
TTCTCCATTCGCGTCACCACCGAGTCCGGCAAGAGCCTCATCGCCAAAGACGTCATCCCGGTCAACTGGATGCCAGACGC
CATCTACGTATCAAACGTCCAGTTCTATTGAGATCGGACGGAAACGATCCTCCTAATTTATTTCCCTATTAATTTGTTCA
AATGGTTTCCTTCTATAACCTATATTTTTCCCGTTGTTAGAAATGGTTCCATTTCCTCCTACAGCTTACTTTAAGATAGT
TGCGCTTGTATATCTGCGCCATCTTGTAAGTTGTAAGATGCTGAAGAACACTATGAATTCTGAGCATCTGATTCTCCGGG
AAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis