Browse Element(s) Details


Os.12746.1.S1_at

Description gb:AK071946.1
DB_XREF= gi:32981969
TID=Os.12746.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.26 (P0481E12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083J19, full insert sequence.
FL= gb:AK072413.1 gb:AK071946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5451011/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12746.1.S1_at--802--3911Chr01:31679558..31679582 (25 bp)
CTGGCCATTGGCTGGTAACAGGAGC
LOC_Os01g54510
Os.12746.1.S1_at--356--4951Chr01:31679660..31679684 (25 bp)
GCATTCATTCATTCACTCTGCTATG
LOC_Os01g54510
Os.12746.1.S1_at--312--4871Chr01:31679679..31679703 (25 bp)
GCTATGAAGCATCCTGTTTAAAGAT
LOC_Os01g54510
Os.12746.1.S1_at--498--8731Chr01:31679741..31679765 (25 bp)
TGTAACATCATATGGATTCGTGCTT
LOC_Os01g54510
Os.12746.1.S1_at--526--6551Chr01:31679784..31679808 (25 bp)
GATTAGCGCCTAGATGTTTGTGTCC
LOC_Os01g54510
Os.12746.1.S1_at--1110--4551Chr01:31679789..31679813 (25 bp)
GCGCCTAGATGTTTGTGTCCGATTA
LOC_Os01g54510
Os.12746.1.S1_at--1--10271Chr01:31679821..31679845 (25 bp)
TTTGACCTGGTCTCAGTGATCTGTT
LOC_Os01g54510
Os.12746.1.S1_at--340--8791Chr01:31679842..31679866 (25 bp)
TGTTAAATCATCTCTGTGTGGCAGT
LOC_Os01g54510
Os.12746.1.S1_at--1127--8991Chr01:31679893..31679917 (25 bp)
TGAATTGGTATTTTGTTATGCGAAG
LOC_Os01g54510
Os.12746.1.S1_at--938--591Chr01:31679910..31679934 (25 bp)
ATGCGAAGTTTAACCCAGTGGAGTT
LOC_Os01g54510
Os.12746.1.S1_at--77--10371Chr01:31679951..31679975 (25 bp)
TTTTTCCCCTTGTGATATCATGATA
LOC_Os01g54510
Target Sequence 
CTGGCCATTGGCTGGTAACAGGAGCAAAGTTGGGGGTCGAGAAGGGCAAGATTGTTGTTCGTGCNAAAATACTCGTTATT
AAACTATTGACCAAATGTTGAAAGCATTCATTCATTCACTCTGCTATGAAGCATCCTGTTTAAAGATAGCATATGTTCTT
TTGTTCATCATGTATGGTTTTTAATGTAACATCATATGGATTCGTGCTTNTTGNTGATTCTGTGAGGGATTAGCGCCTAG
ATGTTTGTGTCCGATTACAAAATATTTGACCTGGTCTCAGTGATCTGTTAAATCATCTCTGTGTGGCAGTAGAAGATGTA
TATTAGTATAAATTTTTGAATTGGTATTTTGTTATGCGAAGTTTAACCCAGTGGAGTTGAACTGGGCAATGCTTTTTTTC
CCCTTGTGATATCATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis