Browse Element(s) Details


Os.12937.1.S1_at

Description gb:AK106400.1
DB_XREF= gi:32991609
TID=Os.12937.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G05, full insert sequence.
FL= gb:AK106400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5113011/11calcium-dependent protein kinase substrate protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12937.1.S1_at--536--4291Chr04:30064928..30064952 (25 bp)
CCTCTCATCAACCAGATCACAGATT
LOC_Os04g51130
Os.12937.1.S1_at--355--10491Chr04:30064951..30064975 (25 bp)
TTACAGACATCAACCTAGCTCTTTC
LOC_Os04g51130
Os.12937.1.S1_at--446--10011Chr04:30064966..30064990 (25 bp)
TAGCTCTTTCAGGTTTCATGGACAA
LOC_Os04g51130
Os.12937.1.S1_at--997--1211Chr04:30065054..30065078 (25 bp)
AGTTAATAATTTGGGCTTTCAGCTC
LOC_Os04g51130
Os.12937.1.S1_at--519--10331Chr04:30065070..30065094 (25 bp)
TTTCAGCTCTACCATTTAGGAAGTC
LOC_Os04g51130
Os.12937.1.S1_at--961--7911Chr04:30065105..30065129 (25 bp)
GGATGTTAAGTGCACTCCAAAAACT
LOC_Os04g51130
Os.12937.1.S1_at--1046--5551Chr04:30065267..30065291 (25 bp)
GAAAGTTGACCGTTCGCTATTAGTT
LOC_Os04g51130
Os.12937.1.S1_at--427--1211Chr04:30065288..30065312 (25 bp)
AGTTTATTCTTTTTCCATGTGCCAG
LOC_Os04g51130
Os.12937.1.S1_at--640--771Chr04:30065304..30065328 (25 bp)
ATGTGCCAGTGTTGAGCATGCTTGT
LOC_Os04g51130
Os.12937.1.S1_at--269--3231Chr04:30065334..30065358 (25 bp)
CAAGTTTGTTTTTTCTGTCTGCTAA
LOC_Os04g51130
Os.12937.1.S1_at--655--8671Chr04:30065471..30065495 (25 bp)
TGTGTATATTCTATCCAAGTATCCT
LOC_Os04g51130
Target Sequence 
CCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGG
AGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTA
GGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGG
ATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATNTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTT
CACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTG
TGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTNTGAATAAATATGGTATTATTTAGT
TNTTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCA
AGTATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis