Browse Element(s) Details


Os.12944.1.S1_at

Description gb:AK101770.1
DB_XREF= gi:32986979
TID=Os.12944.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064I03, full insert sequence.
FL= gb:AK101770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6324010/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12944.1.S1_at--971--9211Chr01:36980396..36980420 (25 bp)
TCCACCTGTTCCACTGATCAAAATA
LOC_Os01g63240
Os.12944.1.S1_at--441--3411Chr01:36980349..36980373 (25 bp)
CAGCAGCTGCAGTGGGTAACATCCT
LOC_Os01g63240
Os.12944.1.S1_at--1060--931Chr01:36980283..36980307 (25 bp)
AGGACTCCAGTCTCTTTTACAAGAT
LOC_Os01g63240
Os.12944.1.S1_at--759--10471Chr01:36980248..36980272 (25 bp)
TTACTGCTGATCTCCATAGTTGGCC
LOC_Os01g63240
Os.12944.1.S1_at--274--291Chr01:36980233..36980257 (25 bp)
ATAGTTGGCCGTGTGACTGATCTCA
LOC_Os01g63240
Os.12944.1.S1_at--409--3691NONE
CTTTGGTATATGCATGCCTTGTTCT
NONE
Os.12944.1.S1_at--420--4651Chr01:36979523..36979547 (25 bp)
GCGTCAGCAAATATTCAGGCATGTG
LOC_Os01g63240
Os.12944.1.S1_at--1109--6791Chr01:36979438..36979462 (25 bp)
GTTTTGATCTCATTGTACAGTTGTC
LOC_Os01g63240
Os.12944.1.S1_at--186--4451Chr01:36979402..36979426 (25 bp)
GCCTTGTATACTTGTCTTCCTAGAG
LOC_Os01g63240
Os.12944.1.S1_at--478--2111Chr01:36979373..36979397 (25 bp)
ACATGTTGACATCCGTCTTACTGCT
LOC_Os01g63240
Os.12944.1.S1_at--384--10471Chr01:36979356..36979380 (25 bp)
TTACTGCTCTGTCTGACTGTCTATA
LOC_Os01g63240
Target Sequence 
TCCACCTGTTCCACTGATCAAAATATNTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCTNACATAAG
GCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGAT
CTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGG
TGGATAAATATGAAGAAAACATTGCCAAGTTNTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAA
GCATATAAATNTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATT
TTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis