Browse Element(s) Details


Os.12963.1.S1_at

Description gb:AK068500.1
DB_XREF= gi:32978518
TID=Os.12963.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155L14, full insert sequence.
FL= gb:AK068500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0734011/1150S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os09g267703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12963.1.S1_at--341--711Chr03:3707059..3707083 (25 bp)
ATGATGGCGTTCGAGGTTCCGGTCT
LOC_Os03g07340
Os.12963.1.S1_at--151--9372Chr09:16261933..16261980 (25 bp)
TCGAGGTTCCGGTCTCGCAGTACGG
LOC_Os09g26770
Os.12963.1.S1_at--91--1131Chr03:3707031..3707055 (25 bp)
AGTACGGGTTCCTGCCAAGATAGCA
LOC_Os03g07340
Os.12963.1.S1_at--449--4391Chr03:3707018..3707042 (25 bp)
GCCAAGATAGCAGCAGCAAATTGTT
LOC_Os03g07340
Os.12963.1.S1_at--820--31Chr03:3706999..3707023 (25 bp)
ATTGTTAGAGATAGAGATGCCTTTC
LOC_Os03g07340
Os.12963.1.S1_at--1012--6471Chr03:3706990..3707014 (25 bp)
GATAGAGATGCCTTTCTGTAGATAG
LOC_Os03g07340
Os.12963.1.S1_at--490--6351Chr03:3706984..3707008 (25 bp)
GATGCCTTTCTGTAGATAGGATAGT
LOC_Os03g07340
Os.12963.1.S1_at--600--3512Chr09:16262076..16262100 (25 bp)
CATGTGAATTGGTGGCTGTGTGTTA
LOC_Os09g26770
Os.12963.1.S1_at--330--8352Chr09:16262089..16262113 (25 bp)
GGCTGTGTGTTACTGTGATGCATCA
LOC_Os09g26770
Os.12963.1.S1_at--148--3571Chr03:3706892..3706916 (25 bp)
CATCAGTTTCTTGGAGAGCATGCAA
LOC_Os03g07340
Os.12963.1.S1_at--648--1531Chr03:3706876..3706900 (25 bp)
AGCATGCAAGTTAATTCAAGTTTCA
LOC_Os03g07340
Target Sequence 
ATGATGGCGTTCGAGGTTCCGGTCTCGCAGTACGGGTTCCTGCCAAGATAGCAGCAGCAAATTGTTAGAGATAGAGATGC
CTTTCTGTAGATAGGATAGTAATAGTGTGTATTTGATGAAAAATGAACTGGAAACATGTGAATTGGTGGCTGTGTGTTAC
TGTGATGCATCAGTTTCTTGGAGAGCATGCAAGTTAATTCAAGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis