Browse Element(s) Details


Os.12964.1.A1_s_at

Description gb:CB628465
DB_XREF= gi:29623454
DB_XREF=OSIIEb04A22.r
CLONE=OSIIEb04A22
TID=Os.12964.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12964 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_182311.1 (A.thaliana) putative tubby protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2280011/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22820Os.55682.1.S1_at11/113+13168311..13169148expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12964.1.A1_s_at--864--832Chr03:13065563..13065587 (25 bp)
ATGGACTACCGTTATCCGATATCAG
NONE
Os.12964.1.A1_s_at--405--4032Chr03:13065572..13065596 (25 bp)
CGTTATCCGATATCAGCATTTCAAT
NONE
Os.12964.1.A1_s_at--573--9732Chr03:13065592..13065615 (24 bp)
TCAATCATTTGCAATCTGTCTGAGC
NONE
Os.12964.1.A1_s_at--123--3891Chr03:13144623..13144647 (25 bp)
CTGTCTGAGCAGTTTTGATACCAAA
LOC_Os03g22800
Os.12964.1.A1_s_at--587--3511Chr03:13143778..13143802 (25 bp)
CATGATAAGCTGGATCGGCAGGCGT
LOC_Os03g22800
Os.12964.1.A1_s_at--683--7331Chr03:13143750..13143774 (25 bp)
GTGCACGAGTCACGCTTGACATTGA
LOC_Os03g22800
Os.12964.1.A1_s_at--773--2851Chr03:13143683..13143707 (25 bp)
AAGTCCATCTCCTGAAGTTGCTGCC
LOC_Os03g22800
Os.12964.1.A1_s_at--499--7431Chr03:13143640..13143664 (25 bp)
GTGTACATAATAGCCACCTGTGATC
LOC_Os03g22800
Os.12964.1.A1_s_at--173--4291Chr03:13143608..13143632 (25 bp)
CCTCCTGGCTTGTAATTCTGTTCTA
LOC_Os03g22800
Os.12964.1.A1_s_at--555--10771Chr03:13143564..13143588 (25 bp)
TTGTTACACATTCTTGGGCGGTGCC
LOC_Os03g22800
Os.12964.1.A1_s_at--706--3971Chr03:13143546..13143570 (25 bp)
CGGTGCCGGCTGTTGAAACCTAGAG
LOC_Os03g22800
Target Sequence 
ATGGACTACCGTTATCCGATATCAGCATTTCAATCATTTGCAATCTGTCTGAGCAGTTTTGATACCAAAATAGCCTGTGA
ATGAGATAAGGTGCTGGATGAAGGACGAACCGTGGAAGCATGATAAGCTGGATCGGCAGGCGTAGCGTGCACGAGTCACG
CTTGACATTGAAGCACAAGGATTTGTTTGGATTTGGGCAGAAAAAAAAACACCAAGTCCATCTCCTGAAGTTGCTGCCCC
GGATGCTGCTGCTGCAGTGTACATAATAGCCACCTGTGATCTTTNTGGCCTCCTGGCTTGTAATTCTGTTCTAGTTTGTT
TTTTTNTTCTAATTGTTACACATTCTTGGGCGGTGCCGGCTGTTGAAACCTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12964.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis