Browse Element(s) Details


Os.12967.2.A1_at

Description gb:AK068197.1
DB_XREF= gi:32978215
TID=Os.12967.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (P0470A12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013140N02, full insert sequence.
FL= gb:AK105811.1 gb:AK120686.1 gb:AK068197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2874011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12967.2.A1_at--717--4391Chr09:17467394..17467418 (25 bp)
GCCAAGGAGCTGACCTTCGTCGCCG
LOC_Os09g28740
Os.12967.2.A1_at--604--9971Chr09:17467421..17467445 (25 bp)
TACCTGAGCCACGAGTAGCAGCAGC
LOC_Os09g28740
Os.12967.2.A1_at--710--1491Chr09:17467446..17467470 (25 bp)
AGCACAACGGCATGGGTGTCAGATT
LOC_Os09g28740
Os.12967.2.A1_at--619--7451Chr09:17467461..17467485 (25 bp)
GTGTCAGATTGGTCGCAGACTTGCA
LOC_Os09g28740
Os.12967.2.A1_at--399--5051Chr09:17467475..17467499 (25 bp)
GCAGACTTGCAGTACATGATTGATT
LOC_Os09g28740
Os.12967.2.A1_at--39--9991Chr09:17467521..17467545 (25 bp)
TACCAGCTAGTACAGTTGTCTACAT
LOC_Os09g28740
Os.12967.2.A1_at--597--8732Chr09:17467545..17467569 (25 bp)
TGTCTTCTTGTCTTGTGCATCTATA
LOC_Os09g28740
Os.12967.2.A1_at--656--7331Chr09:17467559..17467583 (25 bp)
GTGCATCTATAGATTTCTCCATTGT
LOC_Os09g28740
Os.12967.2.A1_at--696--6531Chr09:17467570..17467594 (25 bp)
GATTTCTCCATTGTTTGATCGATCG
LOC_Os09g28740
Os.12967.2.A1_at--365--10771Chr09:17467584..17467608 (25 bp)
TTGATCGATCGGTCATCCGGATCCA
LOC_Os09g28740
Os.12967.2.A1_at--888--7811Chr09:17467594..17467618 (25 bp)
GGTCATCCGGATCCAGTTCATGATG
LOC_Os09g28740
Target Sequence 
GCCAAGGAGCTGACCTTCGTCGCCGGCTACCTGAGCCACGAGTAGCAGCAGCAGCACAACGGCATGGGTGTCAGATTGGT
CGCAGACTTGCAGTACATGATTGATTGATAATTACTCATTAGTGGAGTACCAGCTAGTACAGTTGTCTACATGTCTTCTT
GTCTTGTGCATCTATAGATTTCTCCATTGTTTGATCGATCGGTCATCCGGATCCAGTTCATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12967.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis