Browse Element(s) Details


Os.1321.1.S1_at

Description gb:AK066648.1
DB_XREF= gi:32976666
TID=Os.1321.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.1321 (NCBI UniGene Cluster)
UG_TITLE=GDP dissociation inhibitor protein OsGDI1 (OsGDI1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071E21, full insert sequence.
FL= gb:AF016896.1 gb:AK066648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3454011/11Rab GDP dissociation inhibitor alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34550Os.26993.1.S1_at11/115+20401808..20406977MLO-like protein 1, putative, expressed
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein
LOC_Os05g34570Os.24654.2.S1_x_at5/115+20415768..20418536pentatricopeptide, putative
LOC_Os05g34580OsAffx.27162.1.S1_at11/115+20420994..20421639hypothetical protein
LOC_Os05g34590OsAffx.29576.2.S1_x_at1/115+20424114..20425068hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0048227biological_processplasma membrane to endosome transport
GO:0005093molecular_functionRab GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1321.1.S1_at--198--5731Chr05:20399485..20399509 (25 bp)
GACTGACCATCCAGAGTCTGAGCTA
LOC_Os05g34540
Os.1321.1.S1_at--543--671Chr05:20399571..20399595 (25 bp)
ATGAACCCGTGAATGAGCCATCTCT
LOC_Os05g34540
Os.1321.1.S1_at--385--9771Chr05:20400169..20400193 (25 bp)
TAATGCTATTCCTTGGCGAACACCA
LOC_Os05g34540
Os.1321.1.S1_at--921--4591Chr05:20400184..20400208 (25 bp)
GCGAACACCACAGGTCAGACCATAA
LOC_Os05g34540
Os.1321.1.S1_at--1107--7871Chr05:20400223..20400247 (25 bp)
GGTTATTCGAGCTCCAGATTGTGTA
LOC_Os05g34540
Os.1321.1.S1_at--1053--9451Chr05:20400256..20400280 (25 bp)
TCTGGCCAATGGTCTGTAGCATGCT
LOC_Os05g34540
Os.1321.1.S1_at--37--6971Chr05:20400271..20400295 (25 bp)
GTAGCATGCTTGTTGTTATCAGTAA
LOC_Os05g34540
Os.1321.1.S1_at--967--8971Chr05:20400301..20400325 (25 bp)
TGAACTGTTGCTTCAGATGACTGAA
LOC_Os05g34540
Os.1321.1.S1_at--929--6251Chr05:20400327..20400351 (25 bp)
GATGGTGGTTTTTATTTGCTACTTT
LOC_Os05g34540
Os.1321.1.S1_at--112--7451Chr05:20400377..20400401 (25 bp)
GTGTACACAGTGGAGCGCTTTGCGA
LOC_Os05g34540
Os.1321.1.S1_at--782--1651Chr05:20400390..20400414 (25 bp)
AGCGCTTTGCGACTGATGTATCATA
LOC_Os05g34540
Target Sequence 
GACTGACCATCCAGAGTCTGAGCTAAAGCCTGGGATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATG
ATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTAGCTATGATGCCACCACACATTTTGAG
ACAACGGTGACAGACGTTCTTAATATGTATACACTGATCACTGGAAAGACTGTTGATCTCAGTGTCGATTTGAGTGCTGC
CAGTGCTGCTGNAAGAATATTAGAGTTCACAATCAAAATCCAATCATTCACAAAGATATAATGCTATTCCTTGGCGAACA
CCACAGGTCAGACCATAATGAATGACTGGGATGGTTATTCGAGCTCCAGATTGTGTATTCAGTGTTCTGGCCAATGGTCT
GTAGCATGCTTGTTGTTATCAGTAATATGCTGAACTGTTGCTTCAGATGACTGAATGATGGTGGTTTTTATTTGCTACTT
TCAGTAATGGTTGAATGATGTAAACAGTGTACACAGTGGAGCGCTTTGCGACTGATGTATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis