Browse Element(s) Details


Os.1344.1.S1_at

Description gb:AK104793.1
DB_XREF= gi:32990002
TID=Os.1344.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.1344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F10, full insert sequence.
FL= gb:AK106154.1 gb:AK098925.1 gb:AK064950.1 gb:AK104793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4370011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43680OsAffx.12480.1.S1_at11/112+26358015..26358512hypothetical protein
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009901biological_processanther dehiscence
GO:0010152biological_processpollen maturation
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0008970molecular_functionphospholipase A1 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1344.1.S1_at--183--4531Chr02:26375090..26375114 (25 bp)
GCCGCGTTCGTGGACAAGCTCCAGA
LOC_Os02g43700
Os.1344.1.S1_at--696--1571Chr02:26375106..26375130 (25 bp)
AGCTCCAGAAGAACGGCAGGGTGAA
LOC_Os02g43700
Os.1344.1.S1_at--926--1051Chr02:26375123..26375147 (25 bp)
AGGGTGAACGTCCTGCGCATCGTCA
LOC_Os02g43700
Os.1344.1.S1_at--620--8351Chr02:26375153..26375177 (25 bp)
GGCGACATGGTCACCAAGGTGCCCG
LOC_Os02g43700
Os.1344.1.S1_at--720--3211Chr02:26375203..26375227 (25 bp)
CAAGGAGCAGTACCAGCACGTCGGC
LOC_Os02g43700
Os.1344.1.S1_at--174--4591Chr02:26375236..26375260 (25 bp)
GCGCATCGACAGCAAGAACTCGCCG
LOC_Os02g43700
Os.1344.1.S1_at--716--3471Chr02:26375482..26375506 (25 bp)
CATGGCGTACGGGAACTGCGCCGTC
LOC_Os02g43700
Os.1344.1.S1_at--535--1651Chr02:26375510..26375534 (25 bp)
AGCCCCTCCTCGTGAGACGACGAGA
LOC_Os02g43700
Os.1344.1.S1_at--353--7131Chr02:26375540..26375564 (25 bp)
GTCTTCTTCCAAGAGCCCTTAATTA
LOC_Os02g43700
Os.1344.1.S1_at--1051--5371Chr02:26375579..26375603 (25 bp)
GAAGCAGACCAACAATTCTTTCGTT
LOC_Os02g43700
Os.1344.1.S1_at--1134--4351Chr02:26375587..26375611 (25 bp)
CCAACAATTCTTTCGTTAGTCAGGG
LOC_Os02g43700
Target Sequence 
GCCGCGTTCGTGGACAAGCTCCAGAAGAACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCCGGCGACATGGTCACCAA
GGTGCCCGGCGTGGCGCCGCGCCTGCCGCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGNTGCGCATCGACAGCA
AGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGG
TTCACGGGGACGGGCCGCCCGTTCCGGCACGACGCGCGCCGCAGCGTGATCCGGCTGCTGCAGTTGCAGAGGGGGAACGT
GAAGAAGGAGTACGTGAACCGCGCCCGGGAGCTCGGCGTCGACCCCTCGGCGCCGGTGGACGTCGGCCGGAGCATGGCGT
ACGGGAACTGCGCCGTCGCGAGCCCCTCCTCGTGAGACGACGAGATTGACGTCTTCTTCCAAGAGCCCTTAATTATGTAA
ATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis