Browse Element(s) Details


Os.13467.1.S1_x_at

Description gb:AF416722.1
DB_XREF= gi:15983298
GEN=OsPT1
TID=Os.13467.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13467 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. indica phosphate transporter (OsPT1) mRNA, complete cds.
PROD=phosphate transporter
FL= gb:AF416722.1 gb:AK101380.1 gb:AF493789.1 gb:AK063990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1075011/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10700NANA4+5797240..5801426retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g10709NANA4+5802704..5802950NA
LOC_Os04g10720NANA4+5806482..5807662retrotransposon protein, putative, unclassified
LOC_Os04g10724Os.52702.1.S1_at3/114+5808650..5809720hypothetical protein
LOC_Os04g10730Os.40360.1.S1_x_at1/114+5810725..5813044hypothetical protein
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13467.1.S1_x_at--24--4131Chr04:5828826..5828850 (25 bp)
CGCAGAGCACGGACGCGAGCAAGAC
LOC_Os04g10750
Os.13467.1.S1_x_at--470--8371Chr04:5828876..5828900 (25 bp)
GGCGTGCGCAACTCGCTCTTCTTCC
LOC_Os04g10750
Os.13467.1.S1_x_at--99--10571Chr04:5828927..5828951 (25 bp)
TTCTTCACGTTCCTGGTGCCGGAGT
LOC_Os04g10750
Os.13467.1.S1_x_at--523--4091Chr04:5829021..5829045 (25 bp)
CGACGGCCGATCACCGGACTGCGCC
LOC_Os04g10750
Os.13467.1.S1_x_at--998--4411Chr04:5829052..5829076 (25 bp)
GCCAGCTTGATACCCCGCGGCAAAA
LOC_Os04g10750
Os.13467.1.S1_x_at--806--6451Chr04:5829060..5829084 (25 bp)
GATACCCCGCGGCAAAACCCAAATG
LOC_Os04g10750
Os.13467.1.S1_x_at--1143--6791Chr04:5829098..5829122 (25 bp)
GTTTTGTTGTAATATATGTGCAATG
LOC_Os04g10750
Os.13467.1.S1_x_at--1142--8671Chr04:5829114..5829138 (25 bp)
TGTGCAATGGATGATTATTCTGGTT
LOC_Os04g10750
Os.13467.1.S1_x_at--999--10451Chr04:5829160..5829184 (25 bp)
TTACAAATACTAGTCGTCAACCCAG
LOC_Os04g10750
Os.13467.1.S1_x_at--898--2591Chr04:5829187..5829211 (25 bp)
AACGCACGGGTTACTGTTGATATTA
LOC_Os04g10750
Os.13467.1.S1_x_at--611--4091Chr04:5829189..5829213 (25 bp)
CGCACGGGTTACTGTTGATATTATA
LOC_Os04g10750
Target Sequence 
CGCAGAGCACGGACGCGAGCAAGACGGACGCCGGCTACCCGCCGGGCATCGGCGTGCGCAACTCGCTCTTCTTCCTCGCC
GGATGCAACGTCATCGGNTTCTTCTTCACGTTCCTGGTGCCGGAGTCGAAGGGGAAGTCGCTGGAGGAGCTCTCCGGCGA
GAACGAGGACGATGACGATGTGCCGGANGCGCCCNCGACGGCCGATCACCGGACTGCGCCGGCGCCGCCAGCTTGATACC
CCGCGGCAAAACCCAAATGGTCAATCATCAGNGTTTTGTTGTAATATATGTGCAATGGATGATTATTCTGGTTCTGNTAG
TGTACCNAACAAAATTACAAATACTAGTCGTCAACCCAGNCAACGCACGGGTTACTGTTGATATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13467.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis