Browse Element(s) Details


Os.13615.3.S1_at

Description gb:CB627404
DB_XREF= gi:29622393
DB_XREF=OSIIEb02F14.f
CLONE=OSIIEb02F14
TID=Os.13615.3
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.13615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445H04.34 (P0445H04.34), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g667301/11Exosome complex exonuclease RRP40, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13615.3.S1_at--824--5971NONE
GAGACTTTTTTGATGGGGCACCCGG
NONE
Os.13615.3.S1_at--346--7591NONE
GGGCACCCGGGTATGATGCTCCGCC
NONE
Os.13615.3.S1_at--174--7691NONE
GGGTATGATGCTCCGCCAGTACTAA
NONE
Os.13615.3.S1_at--841--8851NONE
TGATGCTCCGCCAGTACTAATGGTT
NONE
Os.13615.3.S1_at--371--4791NONE
GCTCCGCCAGTACTAATGGTTTTTA
NONE
Os.13615.3.S1_at--457--2311Chr01:39082101..39082125 (25 bp)
AAAGGACTGGTTAGGCGTCAGTTAT
LOC_Os01g66730
Os.13615.3.S1_at--870--7111NONE
GTCAGTTATGATTTTGCAACCCGGG
NONE
Os.13615.3.S1_at--833--7611NONE
GGGAAACGGCCCTATAATCATGTTT
NONE
Os.13615.3.S1_at--503--5531NONE
GAAACGGCCCTATAATCATGTTTTT
NONE
Os.13615.3.S1_at--955--5391NONE
GAAGCTGATGCGTTTTGATGAATGT
NONE
Os.13615.3.S1_at--16--4731NONE
GCTGGTTTTGTTGATTTAGAACGAA
NONE
Target Sequence 
GAGACTTTTTTGATGGGGCACCCGGGTATGATGCTCCGCCAGTACTAATGGTTTTTAAAGGACTGGTTAGGCGTCAGTTA
TGATTTTGCAACCCGGGGAAACGGCCCTATAATCATGTTTTTTCNCCNGGTAGCGGTNGANGAATGTCCCCCTAAGCNGG
TCCNTGAAAGAAGCTGATGCGTTTTGATGAATGTATGAAGTTAACTGGATGATTCCCCTTATGAAACTTTGTAGGGNGTT
TTGTTCCNATCATCCGTGATACGTTGGTTTGTAAGATGTCCTGGGATTTGCCCAAGGTTCCTTGCTGATNTGCTGGTTTT
GTTGATTTAGAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13615.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis