Browse Element(s) Details


Os.13621.1.S1_at

Description gb:AK101532.1
DB_XREF= gi:32986741
TID=Os.13621.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23394 muscle derived-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048A15, full insert sequence.
FL= gb:AY224541.1 gb:AK065540.1 gb:AK101532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1793011/11Alpha-taxilin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13621.1.S1_at--51--1531Chr03:9968461..9968648 (25 bp)
AGCAGTTTCAGGATGCCCTCACAAA
LOC_Os03g17930
Os.13621.1.S1_at--1039--5951Chr03:9968859..9968883 (25 bp)
GAGAATTCAGATGTTGCTCTAGTGA
LOC_Os03g17930
Os.13621.1.S1_at--589--5411Chr03:9969053..9969077 (25 bp)
GAAGCTGGAATCTCTATGTCGATCA
LOC_Os03g17930
Os.13621.1.S1_at--688--2591Chr03:9969098..9969122 (25 bp)
AAGCCCGTCCGGTGGTACTCCTGAT
LOC_Os03g17930
Os.13621.1.S1_at--295--9912Chr03:9969113..9969137 (25 bp)
TACTCCTGATGCCACTTCTAACGAA
LOC_Os03g17930
Os.13621.1.S1_at--114--10031Chr03:9969154..9969178 (25 bp)
TAGAATCATAGTCCTACCGTGCTTC
LOC_Os03g17930
Os.13621.1.S1_at--885--1911Chr03:9969179..9969203 (25 bp)
ACGGTGTTCTTTGTGGATTGCCAGG
LOC_Os03g17930
Os.13621.1.S1_at--903--10671Chr03:9969252..9969276 (25 bp)
TTCCTTGCGATTTTGTAAGTCCTGA
LOC_Os03g17930
Os.13621.1.S1_at--862--6071Chr03:9969281..9969305 (25 bp)
GAGTATCACACATCCGGCTACGCGG
LOC_Os03g17930
Os.13621.1.S1_at--38--8291Chr03:9969304..9969328 (25 bp)
GGCTTACATGCCTCGCCATTTGAGC
LOC_Os03g17930
Os.13621.1.S1_at--636--6051Chr03:9969336..9969360 (25 bp)
GAGATTTTCTAAGGCCTCGCATGGA
LOC_Os03g17930
Target Sequence 
AGCAGTTTCAGGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGATGGTGAAGCTT
ATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTAAATGTGAGAATTCAGATGTTGCTCTAGTGAAGTTGATTGA
GGAGCGTGAGTTAATGAAGAAGCAAGTTGATAAGTTCAAGAATCAAAAAGAGAAGCTGGAATCTCTATGTCGATCATTAC
AGGCAGAAAGGAAACAAAGCCCGTCCGGTGGTACTCCTGATGCCACTTCTAACGAAACAAATCTGGCAACTATAGAATCA
TAGTCCTACCGTGCTTCACGGTGTTCTTTGTGGATTGCCAGGATTTGAAGACANGNGAAATGGATATGTATGATGTTTAT
CATTTTATATTTTCCTTGCGATTTTGTAAGTCCTGAATGANGAGTATCACACATCCGGCTACGCGGCTTACATGCCTCGC
CATTTGAGCCATCTGAGAGATTTTCTAAGGCCTCGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis