Browse Element(s) Details


Os.13704.1.S1_x_at

Description gb:BI797328
DB_XREF= gi:15849052
DB_XREF=H073C04
CLONE=H073C04
TID=Os.13704.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13704 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g489101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g663791/11peptide chain release factor, putative, expressed
LOC_Os11g038301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48870Os.11036.1.S1_at11/115+27951182..27956618Auxin response factor 3, putative, expressed
LOC_Os05g48880Os.9568.1.S1_at11/115+27956918..27959423expressed protein
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13704.1.S1_x_at--622--9833Chr12:14634537..14634560 (24 bp)
TAAACCATCCTTTAGCCACCAAAAG
NONE
Os.13704.1.S1_x_at--1071--3651Chr08:4033142..4033167 (25 bp)
CTTTAGCCACCAAAAGCTGTCGTGG
NONE
Os.13704.1.S1_x_at--1033--10331Chr08:4033143..4033168 (25 bp)
TTTAGCCACCAAAAGCTGTCGTGGG
NONE
Os.13704.1.S1_x_at--408--1651Chr08:4033146..4033171 (25 bp)
AGCCACCAAAAGCTGTCGTGGGAAC
NONE
Os.13704.1.S1_x_at--832--4351Chr08:4033147..4033172 (25 bp)
GCCACCAAAAGCTGTCGTGGGAACT
NONE
Os.13704.1.S1_x_at--675--8692Chr08:4033160..4033185 (25 bp)
TGTCGTGGGAACTTTACCCTTCCAT
NONE
Os.13704.1.S1_x_at--450--5451Chr08:4033168..4033193 (25 bp)
GAACTTTACCCTTCCATGGATGTAG
NONE
Os.13704.1.S1_x_at--563--10471Chr08:4033173..4033198 (25 bp)
TTACCCTTCCATGGATGTAGGATCA
NONE
Os.13704.1.S1_x_at--462--5031NONE
GCACTTAAACCAAAACTAATCTAAG
NONE
Os.13704.1.S1_x_at--1049--1191NONE
AGTTTTGCAAAACCTAGGTGATATG
NONE
Os.13704.1.S1_x_at--504--32724Chr08:4033324..4033346 (23 bp)
CAAAACCTAGGTGATATGGGCTCAA
NONE
Target Sequence 
TAAACCATCCTTTAGCCACCAAAAGCTGTCGTGGGAACTTTACCCTTCCATGGATGTAGGATCAAGGAGGCCGACTAGAG
GGGGGGTGAATAGGCGGTTTTAAAACTTAATGGCACTTAAACCAAAACTAATCTAAGTTGCTAGGCAAGGTGAGGTGCAA
GGTTAACTAAGCAACTAAGTTAAGTTTTGCAAAACCTAGGTGATATGGGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13704.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis