Browse Element(s) Details


Os.13721.1.S1_at

Description gb:AK060199.1
DB_XREF= gi:32970217
TID=Os.13721.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F12, full insert sequence.
FL= gb:AK060199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g537709/11SDA1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13721.1.S1_at--1051--5511Chr04:31829225..31829249 (25 bp)
GAAAATGCCCCTCGCTGCAAGCAGA
LOC_Os04g53770
Os.13721.1.S1_at--103--2731Chr04:31829243..31829267 (25 bp)
AAGCAGAGCGAAGGCAGCGCGTTCT
LOC_Os04g53770
Os.13721.1.S1_at--665--2931Chr04:31829253..31829277 (25 bp)
AAGGCAGCGCGTTCTCGACAGGAGA
LOC_Os04g53770
Os.13721.1.S1_at--650--2391Chr04:31829282..31829306 (25 bp)
AAAACTGCAAAAGCGCTCGGGAAAG
LOC_Os04g53770
Os.13721.1.S1_at--78--711Chr04:31829333..31829357 (25 bp)
ATGAGGGATTTTTTGTACTTGCGTT
LOC_Os04g53770
Os.13721.1.S1_at--560--7011Chr04:31829347..31829371 (25 bp)
GTACTTGCGTTTGCCAATTCTTGTG
LOC_Os04g53770
Os.13721.1.S1_at--484--3151Chr04:31829362..31829386 (25 bp)
AATTCTTGTGGTCTACTGGCCAAAA
LOC_Os04g53770
Os.13721.1.S1_at--1063--8391Chr04:31829379..31829403 (25 bp)
GGCCAAAATTTTGACTCCTTCAGTT
LOC_Os04g53770
Os.13721.1.S1_at--717--5711Chr04:31829391..31829415 (25 bp)
GACTCCTTCAGTTAATGATTTTCGT
LOC_Os04g53770
Os.13721.1.S1_at--281--9731NONE
TCAAGTCTGGTGATCTTTTGTGAGT
NONE
Os.13721.1.S1_at--762--5271Chr04:31829488..31829513 (25 bp)
GAATGAACCGGTATATCATCGCTCA
NONE
Target Sequence 
GAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAA
AGCAATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTGCCAATTCTTGTGGTCTACTGGCCAA
AATTTTGACTCCTTCAGTTAATGATTTTCGTATACAAATATGGTTTCACANACCGTGTATCATCNNTTTTTCAAGTCTGG
TGATCTTTTGTGAGTGGAGAGAATGAACCGGTATATCATCGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis