Browse Element(s) Details


Os.13727.1.S1_at

Description gb:AK067707.1
DB_XREF= gi:32977725
TID=Os.13727.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114H09, full insert sequence.
FL= gb:AK067707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4290011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42870OsAffx.13313.1.S1_at11/113+23856174..23856485hypothetical protein
LOC_Os03g42880Os.27341.1.S1_at11/113+23861951..23867501expressed protein
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein
LOC_Os03g42900Os.13727.1.S1_at11/113+23879913..23888496KH domain containing protein, expressed
LOC_Os03g42910OsAffx.25504.1.S1_at11/113+23891739..23892293hypothetical protein
LOC_Os03g42920OsAffx.25505.1.S1_x_at11/113+23892619..23893119hypothetical protein
LOC_Os03g42930OsAffx.24317.2.S1_x_at7/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.24317.5.S1_x_at2/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.30665.1.A1_x_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.23379.1.S1_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42950NANA3+23901335..23904789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g42954OsAffx.27728.1.S1_at1/113+23908379..23909164hypothetical protein
LOC_Os03g42960OsAffx.17852.2.S1_at11/113+23912119..23915380hypothetical protein
LOC_Os03g42960OsAffx.17852.1.S1_at2/113+23912119..23915380hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13727.1.S1_at--521--7851Chr03:23885575..23885599 (25 bp)
GGTAGTGCATCCCAAGTCCAAACTG
LOC_Os03g42900
Os.13727.1.S1_at--596--2551Chr03:23885595..23885616 (22 bp)
AACTGCCCAGCAACTAGTCCAGAAT
LOC_Os03g42900
Os.13727.1.S1_at--376--3711Chr03:23888085..23888109 (25 bp)
CTACGGATCGGCTGCTTCAGGAGCA
LOC_Os03g42900
Os.13727.1.S1_at--1060--6891Chr03:23888173..23888197 (25 bp)
GTATCAGCAACGCTCAGCTTAGCTT
LOC_Os03g42900
Os.13727.1.S1_at--6--1571Chr03:23888188..23888212 (25 bp)
AGCTTAGCTTTGTGTCGGTTGATGA
LOC_Os03g42900
Os.13727.1.S1_at--630--2231Chr03:23888243..23888267 (25 bp)
ACAATCCTGGATTCCTCAGCTGCGA
LOC_Os03g42900
Os.13727.1.S1_at--930--1591Chr03:23888260..23888284 (25 bp)
AGCTGCGACTACCTTAAGCTCTTAG
LOC_Os03g42900
Os.13727.1.S1_at--203--10391Chr03:23888291..23888315 (25 bp)
TTTTCTACTCTTTTTGCCGTGTGTA
LOC_Os03g42900
Os.13727.1.S1_at--1032--7411Chr03:23888311..23888335 (25 bp)
GTGTATGCCCAACCAGTTTACTTTT
LOC_Os03g42900
Os.13727.1.S1_at--1083--731Chr03:23888341..23888365 (25 bp)
ATGTTTATTCTCGTGGTCTGGATTA
LOC_Os03g42900
Os.13727.1.S1_at--1116--271Chr03:23888371..23888395 (25 bp)
ATAGTAATCCGATGCTGCCCTTTGT
LOC_Os03g42900
Target Sequence 
GGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCC
AGCTTCTAACCCTCCGGCTCCAGCAGTTGATCNGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGG
CTGCTTCAGGAGCAGGGCCTGCNCCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTA
TCAGCAACGCTCAGCTTAGCTTTGTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATT
CCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTT
GGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis