Browse Element(s) Details


Os.13734.1.S1_s_at

Description gb:AK070382.1
DB_XREF= gi:32980406
TID=Os.13734.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.13734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052D06, full insert sequence.
FL= gb:AK061736.1 gb:AK104593.1 gb:AK070382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g414609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein
LOC_Os08g41440Os.53946.1.S1_at11/118+26032225..26034179NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein
LOC_Os08g41470Os.17601.1.S1_at11/118+26059851..26063253expressed protein
LOC_Os08g41480Os.53588.1.S1_at11/118+26065378..26068696SAM domain family protein, expressed
LOC_Os08g41490OsAffx.29623.1.S1_at11/118+26070348..26075782hypothetical protein
LOC_Os08g41490OsAffx.29623.2.S1_s_at7/118+26070348..26075782hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13734.1.S1_s_at--57--2091NONE
ACATATCTTCTTGAGTTGCCAGAGC
NONE
Os.13734.1.S1_s_at--302--10171NONE
TATCTTCTTGAGTTGCCAGAGCCTT
NONE
Os.13734.1.S1_s_at--162--1472Chr08:26052025..26052049 (25 bp)
AGCAATTCCTTGTATCTACCATGGA
LOC_Os08g41460
Os.13734.1.S1_s_at--16--3172Chr08:26052028..26052052 (25 bp)
AATTCCTTGTATCTACCATGGAGAG
LOC_Os08g41460
Os.13734.1.S1_s_at--113--5492Chr08:26052059..26052083 (25 bp)
GAACTTTTCATCTTGTGACAATCGT
LOC_Os08g41460
Os.13734.1.S1_s_at--1088--3551Chr08:26052067..26052091 (25 bp)
CATCTTGTGACAATCGTGTTGTGAA
LOC_Os08g41460
Os.13734.1.S1_s_at--873--7351Chr08:26052087..26052111 (25 bp)
GTGAAGCATCCTTTTTTATACTCCT
LOC_Os08g41460
Os.13734.1.S1_s_at--417--10371Chr08:26052099..26052123 (25 bp)
TTTTTATACTCCTTAGTCTGCCTCT
LOC_Os08g41460
Os.13734.1.S1_s_at--893--1971Chr08:26052106..26052130 (25 bp)
ACTCCTTAGTCTGCCTCTTTAAATA
LOC_Os08g41460
Os.13734.1.S1_s_at--501--7172Chr08:26052114..26052138 (25 bp)
GTCTGCCTCTTTAAATATTGTATAT
LOC_Os08g41460
Os.13734.1.S1_s_at--1137--5272Chr08:26052245..26052269 (25 bp)
GAATGTCTGACTGGCCCATGCTTAT
LOC_Os08g41460
Target Sequence 
ACATATCTTCTTGAGTTGCCAGAGCCTTTCAGTTTCATCTTCACATGGTTTGCCGCACTGCCTCTAATATTTTGGGTAGC
ACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGGGACCGTGCCCGAACTGTGGCAATGAAAATCTTT
CCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAATTGTAGCAGTTCATTG
GTATACGATTCTGCATCCCGATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGCAGGACAGGAG
CTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGATGAACTTTTCATCTTGTGACAATCGTGTTGTGAAGCAT
CCTTTTTTATACTCCTTAGTCTGCCTCTTTAAATATTGTATATATTTGCATTTATTAAAAGTTTAAGAAATAGCTATGAC
TATATATACTGTATAAACACTTTGGAAAGTTTATATTGTACATGAACTAAACTGTCGTCATATCATGATGAATGTCTGAC
TGGCCCATGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13734.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis