Browse Element(s) Details


Os.14095.1.S1_at

Description gb:AF297651.1
DB_XREF= gi:33340006
TID=Os.14095.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.14095 (NCBI UniGene Cluster)
DEF=Oryza sativa putative aminotransferase mRNA, complete cds.
PROD=putative aminotransferase
FL= gb:AK061967.1 gb:AF297651.1 gb:AK102306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5245011/11aminotransferase, class III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14095.1.S1_at--936--6051Chr04:30963005..30963029 (25 bp)
GAGTTGACAACTCCTCATCTTGCAA
LOC_Os04g52450
Os.14095.1.S1_at--768--10731Chr04:30963024..30963048 (25 bp)
TTGCAACTGCACGAGACGACGATGA
LOC_Os04g52450
Os.14095.1.S1_at--37--691Chr04:30963045..30963069 (25 bp)
ATGACGATGATAATGCTGGCAGCGA
LOC_Os04g52450
Os.14095.1.S1_at--464--1171Chr04:30963108..30963132 (25 bp)
AGTAATAATCCCTCGTCTGTCAGAA
LOC_Os04g52450
Os.14095.1.S1_at--133--9411Chr04:30963120..30963144 (25 bp)
TCGTCTGTCAGAAAACTCTACTCAG
LOC_Os04g52450
Os.14095.1.S1_at--825--3071Chr04:30963153..30963177 (25 bp)
AATAACGCTGTTCTTAGCGTGCAAA
LOC_Os04g52450
Os.14095.1.S1_at--615--7351Chr04:30963217..30963241 (25 bp)
GTGAATCTTCACCAGATTTCAGTCT
LOC_Os04g52450
Os.14095.1.S1_at--864--6531Chr04:30963231..30963255 (25 bp)
GATTTCAGTCTTACGCACGGGATTA
LOC_Os04g52450
Os.14095.1.S1_at--1063--1911Chr04:30963247..30963271 (25 bp)
ACGGGATTAGCTGCCGTGGTGAACT
LOC_Os04g52450
Os.14095.1.S1_at--42--5471Chr04:30963267..30963291 (25 bp)
GAACTGGTGGTGACTGTCATCTTGT
LOC_Os04g52450
Os.14095.1.S1_at--641--7371Chr04:30963276..30963300 (25 bp)
GTGACTGTCATCTTGTAGACCAAAT
LOC_Os04g52450
Target Sequence 
GAGTTGACAACTCCTCATCTTGCAACTGCACGAGACGACGATGACGATGATAATGCTGGCAGCGATGATGATGATGGTGA
TGGTGTTCTTGGTGGATGTACAGAGTAATAATCCCTCGTCTGTCAGAAAACTCTACTCAGAGAACAGTAATAACGCTGTT
CTTAGCGTGCAAAAAATAATCAAAACAGCGATCATGCATTCACCCAGAACCGGTGAATCTTCACCAGATTTCAGTCTTAC
GCACGGGATTAGCTGCCGTGGTGAACTGGTGGTGACTGTCATCTTGTAGACCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis