Browse Element(s) Details


Os.14563.1.S1_at

Description gb:AK059514.1
DB_XREF= gi:32969532
TID=Os.14563.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B09, full insert sequence.
FL= gb:AK059514.1 gb:AK066112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4946010/11Two-component response regulator-like PRR37, putative, expressed
LOC_Os03g199801/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49470Os.53368.1.S1_at11/117+29629278..29631774Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007623biological_processcircadian rhythm
GO:0009266biological_processresponse to temperature stimulus
GO:0009640biological_processphotomorphogenesis
GO:0010017biological_processred or far red light signaling pathway
GO:0010031biological_processcircumnutation
GO:0016310biological_processphosphorylation
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14563.1.S1_at--781--7911Chr07:29621540..29621564 (25 bp)
GGTTGTTATGCCTGGTGTATCTGGA
LOC_Os07g49460
Os.14563.1.S1_at--607--4271Chr07:29621550..29621574 (25 bp)
CCTGGTGTATCTGGAATTTCTCTAT
LOC_Os07g49460
Os.14563.1.S1_at--605--191Chr07:29621565..29621589 (25 bp)
ATTTCTCTATTGAGTAGGATCATGA
LOC_Os07g49460
Os.14563.1.S1_at--872--1091NONE
AGTGGCACTCAAGCGCAGAGCTCAT
NONE
Os.14563.1.S1_at--820--9711Chr07:29624702..29624722 (21 bp)
TCAAGCGCAGAGCTCATGGACAAAG
LOC_Os07g49460
Os.14563.1.S1_at--924--3451Chr07:29624740..29624764 (25 bp)
CAGTCCACAGGCTATGTCTCCAGAT
LOC_Os07g49460
Os.14563.1.S1_at--111--4751Chr07:29624771..29624795 (25 bp)
GCTGATCCACCTGATAGCACTTGTG
LOC_Os07g49460
Os.14563.1.S1_at--203--5111Chr07:29624787..29624811 (25 bp)
GCACTTGTGCACAAGTGATCCACCT
LOC_Os07g49460
Os.14563.1.S1_at--1142--7392Chr07:29624801..29624825 (25 bp)
GTGATCCACCTGAAGTCAGATATAT
LOC_Os07g49460
Os.14563.1.S1_at--720--10171Chr07:29624821..29624845 (25 bp)
TATATGCAGCAATAGATGGTTACCA
LOC_Os07g49460
Os.14563.1.S1_at--224--6251Chr07:29624835..29624859 (25 bp)
GATGGTTACCATGTACAAGCAACAA
LOC_Os07g49460
Target Sequence 
GGTTGTTATGCCTGGTGTATCTGGAATTTCTCTATTGAGTAGGATCATGAACCNACAATATTTNGCAAGAATATTCCNAG
TGATTATGATGTCTTCAAATGATGCTATGGGTACAGTTTTTAAGTGTTTGTCAAAGGGCGCTGTTGACTTNTTAGTCAAG
CCCATACGTAAGAATGAACTTAAGAACCTATGGCAGCATGTGTGGAGACGGTGCCACAGCTCCAGTGGCAGTGGAAGTGA
AAGTGGCATTCAGACACAAAAGTGTGCCAAATCAAAAAGTGGGGATGAATCCAATAATAACAATGGCAGCAATGACGATG
ATGACGACGATGGTGTAATCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAAGCGCAGAGCTCA
TGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTATGTCTCCAGATCAATTAGCTGATCCACCTGATAGCACTTG
TGCACAAGTGATCCACCTGAAGTCAGATATATGCAGCAATAGATGGTTACCATGTACAAGCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis