Browse Element(s) Details


Os.14664.1.A1_at

Description gb:AK070439.1
DB_XREF= gi:32980463
TID=Os.14664.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054G23, full insert sequence.
FL= gb:AK070439.1 gb:AK101869.1 gb:AK060779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5412010/11NOT2/NOT3/NOT5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14664.1.A1_at--765--7951NONE
GGATACAAAGGCAACACTACAGATT
NONE
Os.14664.1.A1_at--823--8231Chr02:33157485..33157509 (25 bp)
GGCAACACTACAGATTATGCTATGG
LOC_Os02g54120
Os.14664.1.A1_at--1085--3831Chr02:33157087..33157111 (25 bp)
CCCAAATATCGGACTAAGACCACTA
LOC_Os02g54120
Os.14664.1.A1_at--32--8131Chr02:33157077..33157101 (25 bp)
GGACTAAGACCACTAAATTCTCCAA
LOC_Os02g54120
Os.14664.1.A1_at--39--5831Chr02:33157070..33157094 (25 bp)
GACCACTAAATTCTCCAAATCAAAC
LOC_Os02g54120
Os.14664.1.A1_at--979--3091Chr02:33157010..33157034 (25 bp)
AATACCAGCAACCTCAGGCTCAAAA
LOC_Os02g54120
Os.14664.1.A1_at--434--1491Chr02:33157004..33157028 (25 bp)
AGCAACCTCAGGCTCAAAATCCTTT
LOC_Os02g54120
Os.14664.1.A1_at--223--9551Chr02:33156963..33156987 (25 bp)
TCTTCAGCTACCCAGTCATATAGGG
LOC_Os02g54120
Os.14664.1.A1_at--78--1571Chr02:33156958..33156982 (25 bp)
AGCTACCCAGTCATATAGGGATCAG
LOC_Os02g54120
Os.14664.1.A1_at--1118--10071Chr02:33156943..33156967 (25 bp)
TAGGGATCAGAGTCTAAAGTCCATC
LOC_Os02g54120
Os.14664.1.A1_at--253--8451Chr02:33156912..33156936 (25 bp)
GGCCAAACACCATCTGATCCATATG
LOC_Os02g54120
Target Sequence 
GGATACAAAGGCAACACTACAGATTATGCTATGGAGTTGCATCACAAGGAACAACTTCATGATAATGTACCTGTTATGCA
AGCGCAACAATATCCGATGTCAAGATCAGTTGGCTTTAACTTAGGAAGTAACTACCCACCAAATCGTCAGCAACACCAGC
AAGGTGCTAATTCAGTTCAGAATGCTGGTCCCCCAAATATCGGACTAAGACCACTAAATTCTCCAAATCAAACTTCTAGT
TTGGGATCATATGAGCAACTTATCCAGCAATACCAGCAACCTCAGGCTCAAAATCCTTTCAGATTGCAGCAGGTGTCTTC
AGCTACCCAGTCATATAGGGATCAGAGTCTAAAGTCCATCCAGGGGGGCCAAACACCATCTGATCCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14664.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis