Browse Element(s) Details


Os.14815.1.S1_at

Description gb:AK073925.1
DB_XREF= gi:32983948
TID=Os.14815.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072E11, full insert sequence.
FL= gb:AK073925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3860010/11expressed protein
LOC_Os05g109804/11REX1 DNA Repair family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14815.1.S1_at--730--7031Chr07:23185089..23185113 (25 bp)
GTACAACGACGCACCGGTGCTAGAG
LOC_Os07g38600
Os.14815.1.S1_at--764--2312Chr05:6115452..6115474 (23 bp)
AAAGGTGGCATTCTGTTCTCCAAAG
LOC_Os05g10980
Os.14815.1.S1_at--697--7672Chr05:6115502..6115619 (25 bp)
GGGTTGTTCATCTCCTGCGATGTAC
LOC_Os05g10980
Os.14815.1.S1_at--952--3811NONE
CTGCGATGTACCGATGGCACAGTTC
NONE
Os.14815.1.S1_at--238--5632Chr05:6115697..6115720 (24 bp)
GACACACATGTTTGTGCAGCCTCAT
LOC_Os05g10980
Os.14815.1.S1_at--1144--9032Chr05:6115710..6115734 (25 bp)
TGCAGCCTCATGTGGCGGAGATGAT
LOC_Os05g10980
Os.14815.1.S1_at--783--671Chr07:23183896..23183920 (25 bp)
ATGAAAGATCACTCTACCCCACAAT
LOC_Os07g38600
Os.14815.1.S1_at--975--2231Chr07:23183876..23183900 (25 bp)
ACAATTCCTGTGTGTGCACCATTGA
LOC_Os07g38600
Os.14815.1.S1_at--1093--5512Chr05:6115835..6115859 (25 bp)
GAAAAGATACCAACGCTTGTCTATG
NONE
Os.14815.1.S1_at--807--8951Chr07:23183776..23183800 (25 bp)
TGACTTGTGAGCGTCATGTGCCACT
LOC_Os07g38600
Os.14815.1.S1_at--1031--9752Chr05:6115984..6116008 (25 bp)
TAATCACCTGTCCATTTGGTAGCGT
NONE
Target Sequence 
GTACAACGACGCACCGGTGCTAGAGAAGACAACAGCACAGGGAGGCGACAAAGGTGGCATTCTGTTCTCCAAAGAGCAGA
AAACATGGTTAATGCAATAAAGGGGTTGTTCATCTCCTGCGATGTACCGATGGCACAGTTCATTGTTAATCTGAATGCTT
CAATGCCCGCTTCGGACAAGTTCATCCTGCACATGCTTGACCCGACACACATGTTTGTGCAGCCTCATGTGGCGGAGATG
ATCAGAAGTAAGATTTCAGAGTTCAGAGACCAAAACAGCTACGAGAAGCCAACATGAAAGATCACTCTACCCCACAATTC
CTGTGTGTGCACCATTGAAAAGATACCAACGCTTGTCTATGGTTTATAGTTTTTCTTTAGATAGTCTATGGTTTAGTATA
GTTGTGTGTGATGTGACTTGTGAGCGTCATGTGCCACTCATCAATCATGATGATGTTCAAGAATGATAAACTTGCAGTAT
CAGAAAATGTTGTGGCTTATGACTTATTTGTCTTCAGTGATAGTATTAATCACCTGTCCATTTGGTAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis