Browse Element(s) Details


Os.14890.1.S2_at

Description gb:AK105609.1
DB_XREF= gi:32990818
TID=Os.14890.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full insert sequence.
FL= gb:AK119490.1 gb:AK105609.1 gb:AK121963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0534010/11Proteasome/cyclosome repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed
LOC_Os02g05340Os.14890.1.S1_at11/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05340Os.14890.1.S2_at10/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05350OsAffx.2512.1.S1_x_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05350Os.11895.1.S1_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05360Os.11895.1.S1_at11/112+2575659..2577062expressed protein
LOC_Os02g05370Os.19983.1.S1_x_at7/112+2582087..2586130expressed protein
LOC_Os02g05390Os.45173.1.S1_x_at5/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.46610.1.S1_x_at3/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390OsAffx.20877.1.S1_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.38764.1.S1_x_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14890.1.S2_at--5--9371Chr02:2570534..2570558 (25 bp)
TCGACACCCGTATTGCTTGCAGCAG
LOC_Os02g05340
Os.14890.1.S2_at--1081--2251NONE
AAATACATTCCGCTGACTTCGGTAT
NONE
Os.14890.1.S2_at--512--5691Chr02:2570685..2570709 (25 bp)
GACTTCGGTATTGGAGGGCTTTGTA
LOC_Os02g05340
Os.14890.1.S2_at--387--7631Chr02:2570746..2570770 (25 bp)
GGGACATTTCCAGGCTTGATACAAT
LOC_Os02g05340
Os.14890.1.S2_at--813--4831Chr02:2570784..2570808 (25 bp)
GCTCACAGGCGTGGCATACTAGGGA
LOC_Os02g05340
Os.14890.1.S2_at--905--311Chr02:2570799..2570823 (25 bp)
ATACTAGGGAACCATGCTGCAACAT
LOC_Os02g05340
Os.14890.1.S2_at--778--991Chr02:2570829..2570853 (25 bp)
AGGATCTTTGCCTATTGGGTTCCCT
LOC_Os02g05340
Os.14890.1.S2_at--768--8391Chr02:2570858..2570882 (25 bp)
GGCGCCTCCTGGTGTTAATCGGATA
LOC_Os02g05340
Os.14890.1.S2_at--749--10511Chr02:2570896..2570920 (25 bp)
TTCTACCGGAGTCTCGAGTGTTGGA
LOC_Os02g05340
Os.14890.1.S2_at--654--2271Chr02:2570941..2570965 (25 bp)
AAATCCTTTTTGGTTGTGCAATGAC
LOC_Os02g05340
Os.14890.1.S2_at--589--7371Chr02:2570970..2570994 (25 bp)
GTGACGTATCACTTGTACCCAAACA
LOC_Os02g05340
Target Sequence 
TCGACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAATACATTCCGCTGACTTCGGTATTGGA
GGGCTTTGTAATTCTGAAGAAGAACCCGGAATATAACGAGGAGTGAGGGACATTTCCAGGCTTGATACAATGCTGATTTC
TGGGGCTCACAGGCGTGGCATACTAGGGAACCATGCTGCAACATGGGACAGGATCTTTGCCTATTGGGTTCCCTCCTCGG
CGCCTCCTGGTGTTAATCGGATAGGTCTTTTATCTCTTCTACCGGAGTCTCGAGTGTTGGAGCAGAGCTCTTTGAATTCT
GAAATCCTTTTTGGTTGTGCAATGACTGACGTGACGTATCACTTGTACCCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14890.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis