Browse Element(s) Details


Os.15008.1.S1_at

Description gb:AK069844.1
DB_XREF= gi:32979868
TID=Os.15008.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031F21, full insert sequence.
FL= gb:AK069844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3546011/11Patellin-5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15008.1.S1_at--766--5371Chr05:20982804..20982828 (25 bp)
GAAGACAAGGAAGGTGCCCGCCAAT
LOC_Os05g35460
Os.15008.1.S1_at--1059--1031Chr05:20982793..20982817 (25 bp)
AGGTGCCCGCCAATGAAGAGCCGAT
LOC_Os05g35460
Os.15008.1.S1_at--82--3211Chr05:20982753..20982777 (25 bp)
CAAGGTTGGCGAGCCTGGCAAGATC
LOC_Os05g35460
Os.15008.1.S1_at--471--5171Chr05:20982736..20982760 (25 bp)
GCAAGATCGTCCTCACAGTCGACAA
LOC_Os05g35460
Os.15008.1.S1_at--855--3451Chr05:20982721..20982745 (25 bp)
CAGTCGACAACGCAGCATCCAAGAA
LOC_Os05g35460
Os.15008.1.S1_at--144--5391Chr05:20982693..20982717 (25 bp)
GAAGCAGCTTCTTTACCGATTCAAG
LOC_Os05g35460
Os.15008.1.S1_at--246--4231Chr05:20982678..20982702 (25 bp)
CCGATTCAAGGTCAAGAGCTCCTCT
LOC_Os05g35460
Os.15008.1.S1_at--1117--291Chr05:20982587..20982611 (25 bp)
ATACCACCACCATTTGAACATGTTG
LOC_Os05g35460
Os.15008.1.S1_at--866--9551Chr05:20982512..20982536 (25 bp)
TCTTTAATTTGTTGGCTTGCTGTTC
LOC_Os05g35460
Os.15008.1.S1_at--1068--6271Chr05:20982387..20982411 (25 bp)
GATGTTTCTTGTCTTCTTGAGGTCA
LOC_Os05g35460
Os.15008.1.S1_at--780--6671Chr05:20982317..20982341 (25 bp)
GTTGCTGATCTGTATATCTGTCTGT
LOC_Os05g35460
Target Sequence 
GAAGACAAGGAAGGTGCCCGCCAATGAAGAGCCGATCATGAAGGGCAGCTTCAAGGTTGGCGAGCCTGGCAAGATCGTCC
TCACAGTCGACAACGCAGCATCCAAGAAGAAGAAGCAGCTTCTTTACCGATTCAAGGTCAAGAGCTCCTCTGAATCTGNC
CTAAGGTTCGAGATATTTGGCTCTATAGATATGATCACCAACCAAGGTCCACAGGTCCATACCACCACCATTTGAACATG
TTGCATCATAGAAGAGAACAATAAGATTTTTAGGTGGTCTTTTGTGGTTTTGTTCTTTAATTTGTTGGCTTGCTGTTCTT
CTGGGGGGTTCACATTTGTATGTGTTTACTTAAAACCAAAGTGAGCTTGTTCTATGAGAGATAGGTGGGAGAAGGTGGGG
GGAGGAGTATGAGATGGTGATGTTTCTTGTCTTCTTGAGGTCAGGACAGGAGGGAGGGAACTGTGGAAGGAAGAACTGAA
GACTAGCTGTTGCTGATCTGTATATCTGTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis