Browse Element(s) Details


Os.15260.1.S1_s_at

Description gb:AK068780.1
DB_XREF= gi:32978805
TID=Os.15260.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159E17, full insert sequence.
FL= gb:AK068780.1 gb:AK059213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7055011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein
LOC_Os01g70560Os.47972.1.S1_at11/111+41189635..41191216expressed protein
LOC_Os01g70570Os.35284.1.S1_s_at11/111+41191764..41195193phospholipid/glycerol acyltransferase family protein, putative, expressed
LOC_Os01g70580Os.52120.1.S1_x_at11/111+41195558..41198733Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g70590OsAffx.2448.1.S1_at10/111+41202224..41203138eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.1.S1_at11/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.2.S1_x_at2/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70610OsAffx.23990.2.S1_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70610OsAffx.23990.2.S1_x_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70620OsAffx.23991.1.S1_at11/111+41210028..41210252hypothetical protein
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15260.1.S1_s_at--105--571Chr01:41185955..41185979 (25 bp)
ATCCTGAATCTGCACTACCCATTCG
LOC_Os01g70550
Os.15260.1.S1_s_at--657--5091Chr01:41185931..41185955 (25 bp)
GCACCCCTGAAATGGACCGGCATGA
LOC_Os01g70550
Os.15260.1.S1_s_at--305--4691Chr01:41185880..41185904 (25 bp)
GCGGCAGGCATCTTCGAAGGGTTCT
LOC_Os01g70550
Os.15260.1.S1_s_at--1061--911Chr01:41185875..41185899 (25 bp)
AGGCATCTTCGAAGGGTTCTTGAAC
LOC_Os01g70550
Os.15260.1.S1_s_at--884--6711Chr01:41185860..41185884 (25 bp)
GTTCTTGAACGGGTGGTACTACGAG
LOC_Os01g70550
Os.15260.1.S1_s_at--259--9891Chr01:41185844..41185868 (25 bp)
TACTACGAGGGCACCAACAACACAC
LOC_Os01g70550
Os.15260.1.S1_s_at--492--10471Chr01:41185711..41185735 (25 bp)
TTACTGGGTGAGGAAGCATGTGTTC
LOC_Os01g70550
Os.15260.1.S1_s_at--5--7431Chr01:41185692..41185716 (25 bp)
GTGTTCGTGAAGGTGTGGCATTCCA
LOC_Os01g70550
Os.15260.1.S1_s_at--1056--10011Chr01:41185569..41185593 (25 bp)
TAGCACTGCACTGGTACACTACACT
LOC_Os01g70550
Os.15260.1.S1_s_at--867--10631Chr01:41185362..41185386 (25 bp)
TTCGCTACAATCTGAATAGCCTAGT
LOC_Os01g70550
Os.15260.1.S1_s_at--248--9991Chr01:41185346..41185370 (25 bp)
TAGCCTAGTCTTCAGATTTCTCGTT
LOC_Os01g70550
Target Sequence 
ATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGC
AGGCATCTTCGAAGGGTTCTTGAACGGGTGGTACTACGAGGGCACCAACAACACACTGGTTTACTGGGTGAGGAAGCATG
TGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTNTGGGCCCTT
GTCGCCGGCCTCCTCCACCGTGCTCGCCTNTACTGGAAGCTNTAGCACTGCACTGGTACACTACACTACACTACAGCGTT
TACACAGGGGCTGTTCGGATTGATGTCATTTTCAACCGAACTATTTTTTTTAAAATTACCAAAAAGAAGTGTTGCATTTA
GTTTGTTGCCAAACTTTGATAAATACATAAGAAATCCTACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTA
AGGTTTATTTTCGCTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15260.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis